Pairwise Alignments

Query, 284 a.a., Type IV pilus biogenesis protein PilF from Variovorax sp. SCN45

Subject, 1200 a.a., TonB-dependent receptor protein from Sinorhizobium meliloti 1021

 Score = 52.4 bits (124), Expect = 5e-11
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 54  VTESDESSRQRRARLRMELASGYFEQGQTNVALDEIKQALAADPNNSDAYNLRGLVYMRL 113
           +   D ++ + RA  R      Y        AL ++++AL   P +S  +N  GLV    
Sbjct: 402 IDPDDPTALEARAHYR------YHIDNDLEGALADLERALKTAPGSSSIWNSLGLVQGAR 455

Query: 114 DDAGMAEDSFRRAIAINPRDPNTRHNYGWLLCQQNRYGDAATQFNEALAVPSYADRAKTL 173
            D   AE +F++AIA++P DP +  N       + R  +A  + + AL+V    D A  L
Sbjct: 456 GDNRAAEAAFKQAIALDPLDPVSHANLAIQYMDEMRMAEAKREIDAALSVDPSFDVA--L 513

Query: 174 MTRGVCELKAGQRAQAERTLQQAYEIDASNPVVGFNLALVLA 215
           + RG   +   Q  +A++ ++       +NP    N  L+LA
Sbjct: 514 VARGRYHM---QNGEADKAVEDLLAGSTANPAYS-NAQLLLA 551



 Score = 38.5 bits (88), Expect = 7e-07
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 11/163 (6%)

Query: 54  VTESDESSRQRRARLRMELASGYFEQGQTNVALDEIKQALAADPNNSDAYNLRGLVYMRL 113
           V E   ++  R A +     +G+ E     +A+  IK+A    P++      R  + + L
Sbjct: 329 VEEPPRNASGRYAGMARAWTAGFREDIPAAIAV--IKKAEQQYPDDPTLPAARAQLALLL 386

Query: 114 DDAGMAEDSFRRAIAINPRDP---NTRHNYGWLLCQQNRYGDAATQFNEAL-AVPSYADR 169
           DD     D   RA++I+P DP     R +Y + +   N    A      AL   P  +  
Sbjct: 387 DDRDELRDGVERALSIDPDDPTALEARAHYRYHI--DNDLEGALADLERALKTAPGSSSI 444

Query: 170 AKTLMTRGVCELKAGQRAQAERTLQQAYEIDASNPVVGFNLAL 212
             +L   G+ +   G    AE   +QA  +D  +PV   NLA+
Sbjct: 445 WNSL---GLVQGARGDNRAAEAAFKQAIALDPLDPVSHANLAI 484



 Score = 25.0 bits (53), Expect = 0.008
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 76  YFEQGQTNVALDEIKQALAADPNNSDAYNLRGLVYMRLDDAGMAEDSFRRAIAINPRDP 134
           + + G+ + A++++     A+P  S+A  L    +    D   A  +   A  ++P DP
Sbjct: 520 HMQNGEADKAVEDLLAGSTANPAYSNAQLLLAAAHYEKGDRIPAAQALDNADRLDPNDP 578