Pairwise Alignments

Query, 284 a.a., Type IV pilus biogenesis protein PilF from Variovorax sp. SCN45

Subject, 344 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

 Score = 47.4 bits (111), Expect = 4e-10
 Identities = 39/187 (20%), Positives = 84/187 (44%), Gaps = 8/187 (4%)

Query: 20  FAGVAVTFLLAGCVSTRTTTT----SLADTSSGKGVDIVTESDES--SRQRRARLRMELA 73
           F  V +  L+AGC+  + + +     L   + G  VD ++E + +     + A + +   
Sbjct: 7   FLTVILVLLMAGCIGDQKSKSYNDKGLELYNQGNYVDSISEYNLALLENPKSAEIWVNKG 66

Query: 74  SGYFEQGQTNVALDEIKQALAADPNNSDAYNLRGLVYMRLDDAGMAEDSFRRAIAINPRD 133
           +   + G    + +   +AL  DP NS+A+N  G V  +  +   A + + +++ I+  +
Sbjct: 67  NSLLKLGIYGESTECFDKALLIDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSEN 126

Query: 134 PNTRHNYGWLLCQQNRYGDAATQFNEALAVPSYADRAKTLMTRGVCELKAGQRAQAERTL 193
                N G  L    RY +A   F++++++   A  +     +G  + K G+  ++  + 
Sbjct: 127 SEAWKNKGITLNNMQRYSEAIDCFDKSISI--NAKNSDVWYNKGETQFKLGEYEKSIDSY 184

Query: 194 QQAYEID 200
            +A  ID
Sbjct: 185 NKALLID 191



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 3/187 (1%)

Query: 80  GQTNVALDEIKQALAADPNNSDAYNLRGLVYMRLDDAGMAEDSFRRAIAINPRDPNTRHN 139
           G    AL+   ++L  D  NS+A+  +G+    +     A D F ++I+IN ++ +  +N
Sbjct: 107 GNYQKALEMYDKSLNIDSENSEAWKNKGITLNNMQRYSEAIDCFDKSISINAKNSDVWYN 166

Query: 140 YGWLLCQQNRYGDAATQFNEALAVPSYADRAKTLMTRGVCELKAGQRAQAERTLQQAYEI 199
            G    +   Y  +   +N+AL +    + A  L+ +G   LK      A      A  I
Sbjct: 167 KGETQFKLGEYEKSIDSYNKALLIDEKMETA--LLGKGNSYLKLQNYESAIECFNTAETI 224

Query: 200 DASNPVVGFNLALVLAQREEWSRA-QFYIRRVNNSPSASAETLWLGIKIERKLNNREALA 258
           +  +    +  A      E +  A ++Y   +  +PS S   +  GI +++  N   A++
Sbjct: 225 NPKSEYPPYYKADAYRDTENFEYALKYYDEALEINPSNSDILISKGICLDKMKNYSAAIS 284

Query: 259 QLGGQLQ 265
                +Q
Sbjct: 285 NFDLAIQ 291



 Score = 38.1 bits (87), Expect = 3e-07
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 77  FEQGQTNVALDEIKQALAADPNNSDAYNLRGLVYMRLDDAGMAEDSFRRAIAINPRDPNT 136
           F+ G+   ++D   +AL  D     A   +G  Y++L +   A + F  A  INP+    
Sbjct: 172 FKLGEYEKSIDSYNKALLIDEKMETALLGKGNSYLKLQNYESAIECFNTAETINPKSEYP 231

Query: 137 RHNYGWLLCQQNRYGDAATQFNEALAV-PSYADRAKTLMTRGVCELKAGQRAQAERTLQQ 195
            +           +  A   ++EAL + PS +D    L+++G+C  K    + A      
Sbjct: 232 PYYKADAYRDTENFEYALKYYDEALEINPSNSD---ILISKGICLDKMKNYSAAISNFDL 288

Query: 196 AYEIDASN 203
           A ++D  N
Sbjct: 289 AIQLDPKN 296



 Score = 33.9 bits (76), Expect = 5e-06
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 83  NVALDEIKQALAADPNNSDAYNLRGLVYMRLDDAGMAEDSFRRAIAINPRDPNTRHN 139
           + A+     A+  DP N   + L+G  Y+ L D   +   +++A+ I P++ N + N
Sbjct: 280 SAAISNFDLAIQLDPKNVQIWILKGNSYVGLKDYESSISCYKKALEIEPKNENAKEN 336