Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 191 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Pseudomonas fluorescens FW300-N2E2

 Score =  105 bits (262), Expect = 5e-28
 Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 4/169 (2%)

Query: 1   MNEGMSSTLRARMVARYVELRSKLERIVGSRDDAADAMQETWLRLSTTSSSTSDGGTVNN 60
           M +   S L    +  Y + + +L R +GS + A D + ET+LR+        D   +  
Sbjct: 11  MKDSGRSPLVRLFLTSYEDFKVRLRRRLGSEELANDVLHETYLRVDRMV----DTQEIAQ 66

Query: 61  ADAYLLRMAANIATDQYRQNNVLLVHGEIDELMHIVDEVSDPERIASARSDVQALSQVLG 120
            +AYL RMA NIA D+ + +  LL   EI+EL+ + DE  DP R+   + ++Q L + L 
Sbjct: 67  PNAYLYRMALNIAADRRQADARLLTGDEIEELLQVSDEALDPARVVGGQKELQTLLKALY 126

Query: 121 RMPRRRREILVAARVEGQLNDEIARRFDVSLSTVEKELRAALEFCKQHL 169
            +P RRR I +AAR+E   + EI++RF +S   VEKE++AAL  C   L
Sbjct: 127 ELPARRRRIFIAARLEEAPHLEISQRFGISTRMVEKEIKAALGHCALRL 175