Pairwise Alignments

Query, 332 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Variovorax sp. SCN45

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  199 bits (505), Expect = 1e-55
 Identities = 126/316 (39%), Positives = 172/316 (54%), Gaps = 25/316 (7%)

Query: 20  AEASELRPFIIDSAQHGQRLDRALAALVPEFSRSYLQQLIEAGAVELQGRTVTKVSAGVK 79
           A   EL   + DS Q GQRLD+A+A L  +FSRS L++ +  G + + G  +TK    V 
Sbjct: 2   AHQIELTQTVKDS-QLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVM 60

Query: 80  AGQAGRIELRPTPQSQAFRPETMDLVTVYEDEHLRIVDKPAGLVVHPAPGHWSGTLLNGL 139
            G+   ++       Q +  + + L  VYED+ + +++KP   VVHP  G    T+LN L
Sbjct: 61  GGEVITVQAE-LEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNAL 119

Query: 140 LALDPKAALLPRAGIVHRLDRDTSGLMVVARTRATMDAMVALIAAREVKRQYLAIGHKPW 199
           L      A +PRAGIVHRLD+DT+GLMVVA+T      +V  +  R+V R+Y AI     
Sbjct: 120 LFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAI----V 175

Query: 200 VG--AAARQVDAPIGRDPRNRLRMAVVDLERHAGKTARTLIERLDSHSEGCVVRCTLETG 257
           +G   A   +D PIGR    R  M+V  + +HA  T   + E    H+    +R  LETG
Sbjct: 176 IGTMTAGGMIDKPIGRHSTKRTLMSVSPMGKHA-VTHYRVAEHFREHTR---LRLRLETG 231

Query: 258 RTHQIRVHMASIGHPLVGDALYGGAPAV-------------GLSRQALHAFRLAFVHPVT 304
           RTHQIRVHMA + HPL+GD  YGG   +                RQALHA  L F HPVT
Sbjct: 232 RTHQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVT 291

Query: 305 QEPMEFRSPPPPDLIQ 320
            E +EF +P P D+++
Sbjct: 292 GEELEFHAPVPDDMVE 307