Pairwise Alignments

Query, 332 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Variovorax sp. SCN45

Subject, 298 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis JJ

 Score =  116 bits (290), Expect = 8e-31
 Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 13/223 (5%)

Query: 99  PETMDLVTVYEDEHLRIVDKPAGLVVHPAPGHWSGTLLNGLLALDPKAALLPRAGIVHRL 158
           PE + L  +YED+ L IVDKP  +VVHP     S TL N +           +   V+RL
Sbjct: 77  PENLALNIIYEDDDLLIVDKPKNMVVHPTKNVLSKTLANAVSNHQKINNQNYKIRFVNRL 136

Query: 159 DRDTSGLMVVARTRATMDAMVALIAAREVKRQYLAI--GHKPWV-GAAARQVDAPIGRDP 215
           D DT+GL+++A+   +   +   +    +++ Y+A+  GH     G     +D     D 
Sbjct: 137 DMDTTGLLIIAKDPYSHQRLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSIDL---NDD 193

Query: 216 RNRLRMAVVDLERHAGKTARTLIERLDSHSEGCVVRCTLETGRTHQIRVHMASIGHPLVG 275
             +  ++ V      GK ++T  + ++      ++   L TGRTHQIRVH++S G+ ++G
Sbjct: 194 GIKRELSNV------GKISKTKYKVIEELKNASILEIKLLTGRTHQIRVHLSSTGNYIIG 247

Query: 276 DALYGGAPAVGLSRQALHAFRLAFVHPVTQEPMEFRSPPPPDL 318
           D LYG    + + RQALH++ L F+HP+T+E MEF S  P D+
Sbjct: 248 DTLYGEISNL-IERQALHSYILRFIHPITKEKMEFSSKLPDDM 289