Pairwise Alignments

Query, 268 a.a., Outer membrane beta-barrel assembly protein BamD from Variovorax sp. SCN45

Subject, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

 Score =  140 bits (354), Expect = 2e-38
 Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 2/237 (0%)

Query: 10  TWIALSAVALLAAGCSSTSVDKTANWSPNKIYAEAKDEAGSGAYDKAVPLYEKLEGRAAG 69
           T   L A++LL  GCSS S D   +  P+++Y+EA+    SG +  A+   E L+ R   
Sbjct: 5   TLSGLLALSLLF-GCSS-SPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPF 62

Query: 70  TPLAQQAQLEKAYAQYKSGEKASAIATIDRFMKLHPASPALDYALYLKGVINFNDDLGMF 129
              ++Q QL+  YA YK+ + A  +ATI+RF +L+P    +D+ LY++G+ +   D    
Sbjct: 63  GAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFM 122

Query: 130 AFLTRQDLSERDQKAAKESFESFKDLVTRFPESRYAPDSRQRMNYIVNSLAQYEVHVARY 189
             L   D  +RD +  K +F  FK L+ R+P S YA D+++RM  + N LA+Y++  A +
Sbjct: 123 HDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLATADF 182

Query: 190 YYSRGAYLAAINRAQIALSDYREVPALEEALYIMVKSYDALGMKDLRDDAQRVLTTN 246
           Y  R A++AAINR Q     Y +  A  ++L I +++Y  LG+ D  +  ++++  N
Sbjct: 183 YLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLN 239