Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 191 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Pseudomonas fluorescens FW300-N2E2

 Score = 83.6 bits (205), Expect = 2e-21
 Identities = 44/145 (30%), Positives = 81/145 (55%), Gaps = 1/145 (0%)

Query: 73  NYQALHRRLERQLGCADLASECLHDAWLRLGERQPRETPANPDAYIYRVACNLAMDGMRE 132
           +Y+    RL R+LG  +LA++ LH+ +LR+      +  A P+AY+YR+A N+A D  + 
Sbjct: 26  SYEDFKVRLRRRLGSEELANDVLHETYLRVDRMVDTQEIAQPNAYLYRMALNIAADRRQA 85

Query: 133 RKRWMGLNEDCEDVDVIADLQPGPDMIAEARSEVAAVDRAMQGLPGRHRAVLVALRWHEM 192
             R +   ++ E++  ++D    P  +   + E+  + +A+  LP R R + +A R  E 
Sbjct: 86  DARLL-TGDEIEELLQVSDEALDPARVVGGQKELQTLLKALYELPARRRRIFIAARLEEA 144

Query: 193 SRQEVARRHGVSLRKVDTALRQALG 217
              E+++R G+S R V+  ++ ALG
Sbjct: 145 PHLEISQRFGISTRMVEKEIKAALG 169