Pairwise Alignments

Query, 240 a.a., DNA polymerase III epsilon subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 247 a.a., DNA polymerase III subunit epsilon from Vibrio cholerae E7946 ATCC 55056

 Score =  202 bits (514), Expect = 5e-57
 Identities = 108/238 (45%), Positives = 160/238 (67%), Gaps = 10/238 (4%)

Query: 3   RLIVLDTETTGLSAENGD-----RVIELGCVELFNRKLTGNDLHIYFNPERESHEDALKV 57
           R++VLDTETTG++ E G      R+IE+G VE+ NRKLTG   H+Y  P+R+   +A++V
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIEV 70

Query: 58  HGLTTDFLRDKPKFATLANDIVEYLRDAELIIHNAAFDVGFLNKEFERAGFPPLRTF-VA 116
           HG+T +FL+DKP++  +  + V++++ AEL+ HNA FDVGF++ EF + G    +T    
Sbjct: 71  HGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFC 130

Query: 117 EVTDTLAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDAL 176
           +VTDTLAMAK ++PGKRN+LD LC+R+G+D S+RT HGA LDA++LADVY+ +T GQ +L
Sbjct: 131 KVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190

Query: 177 -LIDVASSEPEVGTAVVAMDLSQFE-LPVILAAEQELAAHEGVLAQLDKSSGGRTLFR 232
               V  +  E+    +    S+ + L V+ A+  EL AH+  L  + KS  G  L+R
Sbjct: 191 QFSSVTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVAKS--GTCLWR 246