Pairwise Alignments

Query, 259 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 312 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score = 72.0 bits (175), Expect = 1e-17
 Identities = 72/256 (28%), Positives = 107/256 (41%), Gaps = 14/256 (5%)

Query: 7   VEAMFSADPKAHFELHWHAEWSVGAILEGRCEFTCAGERRIAGAGDIVLMAPFMLHTAGV 66
           +E + ++  + +F  H H  ++VG I  G   F   G    A    I+L+    +H  G 
Sbjct: 51  IELLDASYHQQNFSRHSHEGYTVGVIETGAQRFYRTGGDHTAPQHSIILVNADEVHN-GR 109

Query: 67  SAQGFRM---VMLYVPHAWAEAR--LGWPVGLRGELLNGVWHDAAMADALACAARSGDGV 121
           SA  F      M  +P  +A     LG   G        V HD  +A+ L     +    
Sbjct: 110 SATDFGWSYRAMYPLPQQFARVHDELGGKAGDAPYFPEPVVHDKPLAELLRLTFDTLSSS 169

Query: 122 AVGRLLEHVLRAQTGRELV------PVERRAGDERVEAICTA-LETEDACRIDPGALASR 174
               L E ++     R +       PVE+        A+    L+      +   ALA  
Sbjct: 170 DNALLRESLIYTSLARLMSHHGASRPVEKSLRPTAHLALVKQFLDDMPTADVSLDALAKL 229

Query: 175 LGVSREHFHRLFRVAVGMAPAHYARLARIGRAKALLREGRAQADVAAQCGFADQAHFSRW 234
            G+S  +  + F+   G+ P  Y    RI  AK ++R+G    +VA  CGF DQ+H +R 
Sbjct: 230 AGLSPFYLIKQFQRQYGLPPHAYQIQGRIRLAKQMIRQGCKLLEVALACGFHDQSHLNRH 289

Query: 235 FRRCFGVTPGNYMARE 250
           F+R  GVTPG Y ARE
Sbjct: 290 FKRAMGVTPGQY-ARE 304



 Score = 26.2 bits (56), Expect = 9e-04
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 145 RAGDERVEAICTALETEDACRIDPGALASRLGVSREHFHRLFRVAVGMAPAHYARLARIG 204
           R   + +   C  LE   AC              + H +R F+ A+G+ P  YAR     
Sbjct: 259 RLAKQMIRQGCKLLEVALACGFH----------DQSHLNRHFKRAMGVTPGQYAREVEDC 308

Query: 205 RAK 207
           RA+
Sbjct: 309 RAR 311