Pairwise Alignments

Query, 539 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 521 a.a., peptide ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  144 bits (364), Expect = 6e-39
 Identities = 141/519 (27%), Positives = 217/519 (41%), Gaps = 39/519 (7%)

Query: 22  AALALGLTAAASVCAQPAAGAG--QTLRIQINSDIRSTDPGGNRDDNTDNVLLHVGEGLV 79
           +A+AL   A A   A PAA       L +   ++ +S DP      N   +L++V +GLV
Sbjct: 7   SAIALAALAFAGAAAAPAAAQTPPDVLVVGQIAEPQSLDPHTVTATNDFRILVNVYDGLV 66

Query: 80  ALREDT-SVGPMLASKVDTSADGLTYTFTLRDGVKFQNGATLTADDVVWNWQRYLKPATN 138
             ++ T  V P LA     S DG TYTFTLR GVKF +G+   A+ V +N+ R LK    
Sbjct: 67  RFKDGTLEVEPALAESWKISDDGKTYTFTLRQGVKFHDGSNFDAEAVKFNFDRMLKKDHP 126

Query: 139 WRCLPEFD-GKGMTKVLSVEAPNPKTVVFKLERASALFLTMMARPDCGSSAIVHRSSVGP 197
           +     F        V +V   +  TV FKL  A A FL+ +A P   +  IV   +V  
Sbjct: 127 FYDTGPFPLSFNFASVKAVNVLDEHTVEFKLSEAFAPFLSNLAYP---TGLIVSPVAVEK 183

Query: 198 DGQ--WKEPVGTGPYKLKEWKRGQYVELTRFDGYSSRAEPRDGLTGGKKAEVENLRFVVI 255
            G+   + P GTGP+K  EW   Q V + R   Y   A           A+++ + F  I
Sbjct: 184 HGKEYGRSPSGTGPFKFVEWLSNQRVVVERNPDYWDSA-----------AKLQAVVFRPI 232

Query: 256 PDSAAAKAALYSGGIDAFISPSPSDVIEMRKRSDVLVDTTPVMTMVALLLQTNDPVLKDV 315
            D+    A + +GGID  +   P ++    + ++  V       +   +L T      D 
Sbjct: 233 TDANTRVAEMMAGGIDVMVEVPPDNLATFEQDANFAVAEQAGPHVWFTILNTKQGPFADK 292

Query: 316 RIRRALALALDTPEIARSVTEGLSAVNNSVVPSSSPYYDAVQGS--GFKRDLTAAKKLLA 373
           R+R+A   A++   +   V  G + V    +P   P ++ V+ S   +  D   AK LLA
Sbjct: 293 RVRQAANYAVNKQTLVDDVLRGTATVAAGPIP---PAFNWVESSVEPYAHDPEKAKALLA 349

Query: 374 EAGYRGQSIRMIANKRYEALYSAAVL---VQAMASEAGINVELEVLDWATQLDRYT---K 427
           EAG     +     +    +     +   +QA     G  V++E  +W T L R     +
Sbjct: 350 EAGVENPQVTFYVTEGGSGMLDPITMGAAIQADLQAVGFKVKIETYEWNTFLGRVNPGLE 409

Query: 428 GQYQSMAFVYSARIDPALNYEMVSGDKAAQPRK------VWDSPYAQTRLTEAMVSRDKA 481
           G+       +       + Y  +  D  A P K       + +P     L +A  S D+A
Sbjct: 410 GKADMAEMAWMTNDPDTVPYLTLRTD--AMPDKGGFNSGYYSNPQLDELLEKARRSTDQA 467

Query: 482 RRQALFDEMHKQMLQDVPMIVLFNASDATAMRKNVVGFK 520
            R  L+ E+   +  D P + + N          V GFK
Sbjct: 468 ERGKLYGEVQSIVHDDAPWLFVANWKQNAVTTAAVKGFK 506