Pairwise Alignments

Query, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 326 a.a., putative peptide ABC transporter, permease protein from Phaeobacter inhibens DSM 17395

 Score =  200 bits (509), Expect = 3e-56
 Identities = 114/319 (35%), Positives = 184/319 (57%), Gaps = 9/319 (2%)

Query: 1   MFAYLLRRIAMTIPTLLLVSIAVFTLMRLIPGDPVLLMLGEGADPAQLALMRHQMGLDQP 60
           M AY++RRI  ++  L +V +  F++ R + GDP+  MLG+      +  +R  +GLDQP
Sbjct: 1   MLAYIIRRIMQSVLVLFVVGLVAFSMFRFV-GDPIENMLGQERTTEDVVRLRADLGLDQP 59

Query: 61  LPVQYLVWLRHALTGDLGVSTTNGLAVLPLIWERFQVSAVIVLVAVALASLIAVPAGLVA 120
            PVQY  +L +A  G+ G+S   G  V  ++ ER   +  + LV+  LA ++ +  G++ 
Sbjct: 60  FPVQYWRFLENAAQGNFGLSYRQGRPVADILIERAPATLELALVSGTLAMVLGIGLGVLT 119

Query: 121 AWRKDKPTDLAIIGAATLMLSVPSFWLGLLLLMFFGQYLGWLPVVG------YVPMSENF 174
           A R+D      I+ A+ + +S+P+F +G+LL+  F   LGWLP  G          S  F
Sbjct: 120 AIRRDGWLANTIMTASLIGVSLPTFLIGILLIYVFSVELGWLPSFGRGETVMLGQWSTGF 179

Query: 175 --SQGVLYVILPIATLLLVETGVLTRMSRASTIEILRLEYVTHARAKGVPESQVLRRHVL 232
               G++ ++LP  TL L +  ++ R+ R+  +E+LR +Y+  ARA+G+ E  V  RH L
Sbjct: 180 LTKSGLMSLVLPSITLGLYQMTLIMRLVRSEMLEVLRTDYIRFARARGLGERAVYFRHAL 239

Query: 233 PNAFNPTLTMIGLILGHLLSGIAVLETVFTLPGLGRLMIDSIFARDYPVLQGCLLFTACI 292
            N   P +T+IGL LG +++   + ETVF  PG+G L I+++   D PV+   L+  + +
Sbjct: 240 VNTMVPVITIIGLQLGSIIAFAIITETVFQWPGVGLLFINAVQFVDIPVMAAYLMLISVL 299

Query: 293 YVVINLVVDLCYPLFDPRV 311
           +V INL+VDL Y L DPR+
Sbjct: 300 FVGINLIVDLLYFLIDPRL 318