Pairwise Alignments

Query, 554 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  412 bits (1059), Expect = e-119
 Identities = 237/525 (45%), Positives = 325/525 (61%), Gaps = 9/525 (1%)

Query: 12  VLSVEHLKIE--LRHGARPLVHDLSFEVKPGEFLAVVGESGSGKTMAARAILQLLPPGIL 69
           VL +++L +   +   ARP+   +S  +  GE LA+VGESGSGK++ A AIL+LLP G  
Sbjct: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64

Query: 70  Q-TGGRIVFDGEDLAARDPKAMRPIRGPGIGMVFQEPMVSLNPVHRIGEQMAEGLRMHTQ 128
               G I F   D      +A+R IRG  IGM+FQEPMVSLNP+H+IG+Q+ E L +H  
Sbjct: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124

Query: 129 LPAAEIRARILDMLRRVQIADPERCMHAYPHEFSGGMRQRIMLASVMLLKPRLLIADEPT 188
           L A     + ++ L +V I  PE  ++AYPHE SGG RQR+M+A  ++ +P LLIADEPT
Sbjct: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184

Query: 189 TALDTLSQREVLDLMVGLARDNGTAVLLITHNLGLVGRYAQRAIVLEKGQLVETGDVPGI 248
           TALD   Q ++LDL+  L ++ G A+L ITH+L +V R A R  V++ GQLVET     +
Sbjct: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244

Query: 249 LVAPKQPYTRKLVDALPRRQAAKPQGDAPRQPLVQVRSLCVSFSGARAGLFKR-HAPVHV 307
             AP  PYT++L++A PR        DAP   L+Q   L V F   + G F+R  A +  
Sbjct: 245 FAAPAHPYTQQLINADPRGVPVPTAMDAP--TLLQAEKLRVWFP-IKGGYFRRTQAYIKA 301

Query: 308 IDSLDLDIHPGEMVALVGGSGSGKTTLGRAILRLAPSQSGQILFRGEDVRTAGRAALHRF 367
           +  +   +  G+ + LVG SGSGK+T G AIL+L  SQ G I F G+D++   R  +  +
Sbjct: 302 VTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQ-GAIRFAGQDLQALKRREMLPY 360

Query: 368 RLACQLVFQDPFSSLDPRMRVQDIVAEPLRHLPSLDAAARVRRVKETLDEVGLD-GLGAR 426
           R   Q+VFQDP+S+L+PRM V  ++ E LR    L+       +   + EVGLD     R
Sbjct: 361 RSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRHR 420

Query: 427 YPHELSGGQRQRVAIARALVRRPAFVVADEPVSALDMTIQAQVLSLFQSLQQHHGFACLF 486
           YP+E SGGQRQR+AIARALV +P F++ DEP S+LD T+QAQVL L + LQQ +    LF
Sbjct: 421 YPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLF 480

Query: 487 ISHDLAAVEQIADRVIVMERGRIVEQGARDAVFDDPRHAYTQALL 531
           ISHDLA +  +    IVM+ G IVE G   ++F++P H YTQ L+
Sbjct: 481 ISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525



 Score =  173 bits (439), Expect = 1e-47
 Identities = 106/239 (44%), Positives = 140/239 (58%), Gaps = 9/239 (3%)

Query: 307 VIDSLDLDIHPGEMVALVGGSGSGKTTLGRAILRLAPSQS-----GQILFRGEDVRTAGR 361
           V + + L I  GE +ALVG SGSGK+    AILRL P  S     G I F   D      
Sbjct: 24  VTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHFGDVDTLRCSE 83

Query: 362 AALHRFRLA-CQLVFQDPFSSLDPRMRVQDIVAEPLRHLPSLDAAARVRRVKETLDEVGL 420
            AL   R     ++FQ+P  SL+P  ++   + E L     L A A  ++  E L +VG+
Sbjct: 84  RALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKAIEWLGKVGI 143

Query: 421 DGLGAR---YPHELSGGQRQRVAIARALVRRPAFVVADEPVSALDMTIQAQVLSLFQSLQ 477
                +   YPHELSGG+RQRV IA AL+  P  ++ADEP +ALD+++QAQ+L L +SLQ
Sbjct: 144 RHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQ 203

Query: 478 QHHGFACLFISHDLAAVEQIADRVIVMERGRIVEQGARDAVFDDPRHAYTQALLAATPR 536
           Q  G A LFI+HDL+ V +IADRV VM+ G++VE  A   +F  P H YTQ L+ A PR
Sbjct: 204 QELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLINADPR 262