Pairwise Alignments

Query, 1031 a.a., CzcABC family efflux RND transporter, transmembrane protein from Variovorax sp. SCN45

Subject, 1081 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  372 bits (954), Expect = e-106
 Identities = 295/1101 (26%), Positives = 505/1101 (45%), Gaps = 120/1101 (10%)

Query: 5    IITQFFRRRHLVWAMSIALVLFGAWSWTQMTVEAYPDLGDVTVQVTTQVNGLASEEIEQQ 64
            IIT   +R   VW   +A++LFG   ++++ V   PDL   TV + T  +G A  E+EQ 
Sbjct: 3    IITTSVQRPVTVWMFMLAVILFGMVGFSRLAVMLLPDLSYPTVTIRTLYDGAAPVEVEQL 62

Query: 65   ITTPLERALSNTPGLASIRSSSTFGLSLITLTFKDGTDDYFARQRVTERIGQVSLPSGAQ 124
            ++ P+E ++    GL  I S S  G+S + L F+ GTD   A   V E++  ++LP   Q
Sbjct: 63   VSKPIEESVGTVKGLRKISSVSRSGMSDVILEFEWGTDMDMANLDVREKLDIIALPLDVQ 122

Query: 125  --------PGLDPVAGPAGEIYRYTLESDTKNLMELSEIQRWIVIPGLRQ---VAGVVNI 173
                    P LDP       I R  L  +  +  EL +++ +      RQ   + GV  +
Sbjct: 123  KPLLLRFNPNLDP-------IMRVALSREEASGDELKQLRTYADEELKRQLEGLPGVAAV 175

Query: 174  TNFGGFTKEFQLELDPAALQKYGLALSDVVTAINNNSANAGGGRIARGEQSYVVRGIGLI 233
               GG  +E Q+ L+   L +  L    + + I   + N   G++ +G++ Y+VR +   
Sbjct: 176  RLSGGLEQEVQILLNQERLSQLDLDAEQIRSRIAAENLNVSAGKVVQGDKEYLVRTLNQF 235

Query: 234  TSLDDLGAVVVSQSGGSPVLVRDLGRLQFGHQERGGILGKDRNPDTIEGIVLMLKYENPS 293
             SL++LG VVV ++G S V + ++  +  GH+ER  I  +    ++IE  +      N  
Sbjct: 236  NSLEELGQVVVYRNGQSLVRLFEVATIVDGHKERSDIT-RIGQRESIELAIYKEGDANTV 294

Query: 294  RVLEGVHKKIDELQAQLAPMGVKIVPYIDRDDLVKLTVDKVTHTVLEGMALVCFVLILFL 353
             V + + + I+ +  +     ++I+   D+ + ++  V +VT + L G  L   V+ LFL
Sbjct: 295  TVAKKLKQDIERINGKDPLAKMEII--YDQSEFIESAVSEVTSSALIGSILAMLVIYLFL 352

Query: 354  GSPRSAVVAAVAIPMSLVTVFIVMHFTRMPANLFSLG--AIDFGIIVDGAIVVMEAILRR 411
                  ++ +++IP S++  F +M+F  +  N+ SLG  A+  G++VD AIVV+E I R 
Sbjct: 353  RDIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIVVLENIDRY 412

Query: 412  REEEPHATLTEGNILETVSHVSGPIFFATLIIITAYFPLFAFERAEGKLFKPMAFTVGYA 471
            +++           ++    VSG IF +TL  +  + PL   +   G LF   A TV +A
Sbjct: 413  KQQ---GLSRIDAAIKGTREVSGAIFASTLTTLAVFVPLVFVDGIAGALFSDQALTVTFA 469

Query: 472  LVGALLCAITLIPSLAYVALRKPMKPFVNK-----------------------PLV---- 504
            L+ +LL A+T IP LA     K + P + K                       P V    
Sbjct: 470  LLASLLVALTSIPMLASREGFKALPPLLEKESRAKPEGKMGKLKHYSATVFSFPFVLLFK 529

Query: 505  WLTGA-----------YRRVLGHLLRV-----------------PAIAYALSIAALAAVA 536
            WL  A           +  ++G LL+                  P +A AL    L  V 
Sbjct: 530  WLPAALLTAALSLSRLFSWLMGMLLKPFTWLFNLGYRALEASYRPLLAAALKARVLTLVV 589

Query: 537  ILGATA---------GREFLPDIDEGALWLQVQLPSGLSLDKASEMTAELRHVLLEYPEV 587
             LG TA         G E +P++D+G  ++++ LP G  + +   +  +L   + + P V
Sbjct: 590  ALGITASAGLLLPRLGMELIPNMDQGEFYVEILLPPGTEVGETDRVLQQLAFSIKDMPAV 649

Query: 588  SYVVTQLGRN-------DDGTDPWTPSHVEVPVGLKPYSEWPAGVNKAAFVRTLNERFSK 640
             +  +Q G           G + W    ++V +      E  + V        L     +
Sbjct: 650  KHAYSQAGSGGLMTSDVSRGGENW--GRLQVVLADHDAFEQVSDV--------LRHEIRR 699

Query: 641  MPGFDVGISQPIIDGVNDAVGGAHSPLVLRIYGDDLKESRRIGNEIVDLLHTVRGTASAS 700
            +P  +  +  P        +    +PL + + G +L   ++  + +V  L      A  +
Sbjct: 700  IPELEAKVKYP-------ELFSFRTPLEIELRGYELDLLKQSADSLVRALGQSERFADIN 752

Query: 701  LFQEPPIPQVVIKLDREAAARLGVNANDVASLVQTGMGGAPVITVYSGDRTYNVTVKLPK 760
                   P++ I  D    A LG++A  VA+ +   +GG         DR  ++ V+  +
Sbjct: 753  TSLRDGQPELAIHFDSNRLAALGMDAPTVANRIAQRIGGTVASKYSLRDRKIDILVRAEE 812

Query: 761  SAKSGTEAIGSLLLNGAGGAKIPLSQVASVKLQTGESTISHELNSRQITVRIDNRGRDLA 820
            + +     IG++++N      IPLS VA VKL+ G S I+     R   V  +    DLA
Sbjct: 813  TERDQISDIGNMIINPDAATPIPLSAVADVKLELGPSAINRISQQRVALVSANLAFGDLA 872

Query: 821  SYLVEAQDRIAKDVKFDHAKFRLQWAGQFENQQRAQARLAVSLLIVVSIMAVLLFFQFGK 880
              + EA+  +AK      A  +  + GQ E  + +   L ++L++ V ++ +++  QF  
Sbjct: 873  EAVTEARSILAKQQL--PASIQASFGGQNEEMEHSFQSLQIALVLAVFLVYLVMASQFES 930

Query: 881  IRHVALILGVVPMATLGGLIAVHVAGETLNVATAVGFIALFGVSIQNGIIMVANFRRVRG 940
              H  LIL  VPMA  G +  +++ G  ++V   +G I L G+ + N I+++    ++R 
Sbjct: 931  FLHPLLILFAVPMAVSGSVFGLYLTGTHVSVVVFIGLIMLAGIVVNNAIVLIDRINQLRS 990

Query: 941  EGLALEASVLEGATERLRPVLMTATVASIGMLPAALATGVGTDVQRGLATVVVGGLVVST 1000
            EG+    ++ E A  RLRP++MT     +G+LP AL  G G +V+  +A  V+ GL +ST
Sbjct: 991  EGVEKLEAISEAAKSRLRPIMMTTLTTVLGLLPMALGLGDGAEVRAPMAITVIFGLALST 1050

Query: 1001 LLTLFILPTLFFALERLFERK 1021
            LLTL ++P L+     LF+RK
Sbjct: 1051 LLTLVLIPVLY----ALFDRK 1067