Pairwise Alignments

Query, 1031 a.a., CzcABC family efflux RND transporter, transmembrane protein from Variovorax sp. SCN45

Subject, 1047 a.a., CzcA family heavy metal efflux protein (RefSeq) from Shewanella loihica PV-4

 Score =  501 bits (1289), Expect = e-145
 Identities = 330/1041 (31%), Positives = 548/1041 (52%), Gaps = 32/1041 (3%)

Query: 1    MINLIITQFFRRRHLVWAMSIALVLFGAWSWTQMTVEAYPDLGDVTVQVTTQVNGLASEE 60
            M+  II     +R +V  +++ + ++G     +  ++A PDL DV V + T   G A + 
Sbjct: 1    MLKKIIEASIAQRLMVLIIALMITVWGVQELRKTPLDALPDLSDVQVIIKTPYPGQAPKL 60

Query: 61   IEQQITTPLERALSNTPGLASIRSSSTFGLSLITLTFKDGTDDYFARQRVTERIGQVS-- 118
            +E+Q+T PL  A+   PG  ++R  S FG S + + F+DGTD Y+AR RV E + QVS  
Sbjct: 61   VEEQVTYPLSTAMLAVPGAKTVRGYSFFGDSYVYVIFEDGTDIYWARSRVLEYLSQVSSR 120

Query: 119  LPSGAQPGLDPVAGPAGEIYRYTL--ESDTKNLMELSEIQRWIVIPGLRQVAGVVNITNF 176
            LP G QP L P A   G IY Y L   S   +L +L  +Q W +   L+ VAGV  +   
Sbjct: 121  LPQGLQPSLGPDASGVGWIYEYALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVSEVATV 180

Query: 177  GGFTKEFQLELDPAALQKYGLALSDVVTAINNNSANAGGGRIARGEQSYVVRGIGLITSL 236
            GG  + +Q+ ++P  L  Y L ++ V  AIN ++  AGG  I   E  Y+VR  G   +L
Sbjct: 181  GGMEQTYQIVIEPDKLAIYKLDIAAVKNAINKSNTEAGGSVIEMAEAEYMVRAKGYRQTL 240

Query: 237  DDLGAVV--VSQSGGSPVLVRDLGRLQFGHQERGGILGKDRNPDTIEGIVLMLKYENPSR 294
            DD   +   V+   G+ +L++D+  ++ G   R GI   D   + + GI++M   EN   
Sbjct: 241  DDFREIPLGVTSPSGTALLLKDVATVRKGPASRRGIAELDGEGEVVGGIIVMRYGENALA 300

Query: 295  VLEGVHKKIDELQAQLAPMGVKIVPYIDRDDLVKLTVDKVTHTVLEGMALVCFVLILFLG 354
             ++ V  K+++L+A L P GV+I+P  DR +L+  +VD + H V+E M +V  V +LFL 
Sbjct: 301  TIDAVKAKLEQLKAGL-PQGVEIIPTYDRSELINKSVDNLFHKVIEEMLVVGLVCLLFLL 359

Query: 355  SPRSAVVAAVAIPMSLVTVFIVMHFTRMPANLFSLG--AIDFGIIVDGAIVVMEAILRRR 412
              RS +VA + +P+S++  FIVM+   + AN+ SLG  AI  G +VDGAIV++E + +  
Sbjct: 360  HARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIGAVVDGAIVMIENMHKHL 419

Query: 413  E------EEPHATLTEGNILETVSHVSGP-IFFATLIIITAYFPLFAFERAEGKLFKPMA 465
            E                +I+   S   GP +FF+ LII  ++ P+FA E  EG+LF P+A
Sbjct: 420  EHFKDEYRRDPDNKEHWHIVAKASIEVGPALFFSLLIITLSFVPVFALEAQEGRLFSPLA 479

Query: 466  FTVGYALVGALLCAITLIPSLAYVALRKPMKPFVNKPLV-WLTGAYRRVLGHLLRVPAIA 524
            +T  +A+  A + +ITL+P L    +R  +    + P+   L   Y+  L  +LR P I 
Sbjct: 480  YTKTFAMAAAAILSITLVPILMGYFIRGKIPKETSNPISRVLIALYKPALNMVLRFPKIT 539

Query: 525  YALSIAALAAVAILGATAGREFLPDIDEG-ALWLQVQLPSGLSLDKASEMTAELRHVLLE 583
              L++ AL +        G EF+P+++EG  L++   LP G+S  KA+E+  +   ++  
Sbjct: 540  LMLAVIALGSAWYPVTKMGSEFMPELEEGDLLYMPTALP-GISASKAAEVLQQTDRLIKT 598

Query: 584  YPEVSYVVTQLGRNDDGTDPWTPSHVEVPVGLKPYSEWPAGVNKAAFVRTLNERFSKMPG 643
             PEV  V  ++GR +  TDP   + +E  + LKP  EW  GV+    +  L ++  K+PG
Sbjct: 599  VPEVKRVFGKVGRAETATDPAPLTMLETTIMLKPREEWREGVDLQGVIDQL-QKTVKVPG 657

Query: 644  FDVGISQPIIDGVNDAVGGAHSPLVLRIYGDDLKESRRIGNEIVDLLHTVRGTASASLFQ 703
                  QPI   ++    G  +P+ ++I G D+ E +++G +I  +L  +  T SA   +
Sbjct: 658  LTNAWVQPIKTRIDMLSTGIKTPVGIKITGADVNELQKVGADIEAILSQLPNTKSAYAER 717

Query: 704  EPPIPQVVIKLDREAAARLGVNANDVASLVQTGMGGAPVITVYSGDRTYNVTVKLPKSAK 763
                  V I    + A+R G+   D+  +V+  +GG  +     G   Y + ++ P++ +
Sbjct: 718  VGGGRYVDITPKLDVASRYGMTLTDIQDVVRYAIGGMDIGESIQGAERYPINLRYPRALR 777

Query: 764  SGTEAIGSLLLNGAGGAKIPLSQVASVKLQTGESTISHELNSRQIT-VRIDNRGRDLASY 822
               E +  L +    G  +PL  +A +++  G   +  E N R I+ V +D +   +  Y
Sbjct: 778  DNIEKLRELPVITKSGHYLPLRNLADIEITDGAPMLKSE-NGRLISWVFVDIQNTSIGEY 836

Query: 823  LVEAQDRIAKDVKFDHAKFRLQWAGQFENQQRAQARLAVSLLIVVSIMAVLLFFQFGKIR 882
            + EA+  + + +K    ++   +AGQ+E  QR  A+L   + + + ++ +LL   FG   
Sbjct: 837  IDEAKSALDQQLKVP-PRYSYSFAGQYEYMQRVDAKLKKVIPMALGVIFILLMMTFGSPL 895

Query: 883  HVALILGVVPMATLGGLIAVHVAGETLNVATAVGFIALFGVSIQNGIIMVA------NFR 936
              ++I+  +P A +G    +      ++VA AVG IAL GV+ + G++M+         R
Sbjct: 896  QASIIMLSLPFALVGSTWLLFALDFNMSVAVAVGMIALAGVAAEFGVVMLVYLNNAIKHR 955

Query: 937  RVRG--EGLA-LEASVLEGATERLRPVLMTATVASIGMLPAALATGVGTDVQRGLATVVV 993
            +  G  E +A L+ +++EGA  R+RP  MT      G+LP     G G DV + +A  +V
Sbjct: 956  KDTGGYEYVADLKEALIEGAVMRIRPKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMV 1015

Query: 994  GGLVVSTLLTLFILPTLFFAL 1014
            GG++ + LL+LF+LP L+  +
Sbjct: 1016 GGMITAPLLSLFVLPALYLLI 1036