Pairwise Alignments

Query, 305 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

Subject, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (266), Expect = 4e-28
 Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 6/291 (2%)

Query: 6   DLSTRQLRAFLALAEHRNFTRAAQTSHLSQPAFSALIRTLEDAVGTRLFDRDTRSVQLTP 65
           ++  + L+ FL L E  NFTRAAQ   ++QP  S +I+ LE+++G  L  R+ + V+LT 
Sbjct: 2   NIPIKTLQCFLTLVETENFTRAAQKCFITQPTLSKIIQRLEESLGETLLIRNNQKVELTQ 61

Query: 66  EGLLFEGSARRLLDDMGNAMVDLADHVERRKGRVRVAALPSLAAGWLPAVFAEFMQAWPG 125
            G LFE SAR +L        D+++    + GR+R+   P +++  +  +   + + +PG
Sbjct: 62  AGQLFEHSAREILGQWHRLQEDMSNLSGLKSGRLRLGVCPMMSS-LIIGLLTSYRKRYPG 120

Query: 126 IRVDLDDALSDACIALVRAGQADFALAASGAEAAAGSDLRARKLCSDRFHLVCRADHPLA 185
           + + + +     C   +     D A  A        ++L  + L            HPLA
Sbjct: 121 VELQMYEYGGFGCEQALLNNSLDIAFTA--LPTTHETELINQPLTKYPLLACLPEAHPLA 178

Query: 186 REPRLTVKKIAPYPFIQMARNSSVRQALDAALHPQ--RLNAVFEVEHLATVMGLVEAGLG 243
            +  L+ +   PYPFI    + S+ + ++        +LN  F       +  +VEA +G
Sbjct: 179 AKSYLSWQDFEPYPFILYNEDFSLAKLINRLSRKAGVQLNIAFRSGQWDFLATMVEADMG 238

Query: 244 ISVVPALTLFHFQRETLVTRALPLPALTRTLYLVQRREGSLSVAAQTLYDL 294
           ++++P           LV R +  PALT  L L+ R+   L+ AA  L +L
Sbjct: 239 LAILPEPICQKLSNSKLVFRPMQ-PALTWDLALIWRQNLPLTPAANALLEL 288