Pairwise Alignments

Query, 300 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 317 a.a., L-arabinose transporter permease from Sinorhizobium meliloti 1021

 Score = 54.3 bits (129), Expect = 4e-12
 Identities = 75/279 (26%), Positives = 116/279 (41%), Gaps = 36/279 (12%)

Query: 1   MTDTLVSILISGTPLIYVTLAGVLAQRAGIWNLGLEGLMIIGSCALIVGIVQTGSFAQAM 60
           MT +L  +L+    L+ +  A  +     + N   E  M+     L+  +V  G  A  M
Sbjct: 1   MTTSLKKLLLGEQGLLVIFAAAFVVVALTVPNFLTERNML----GLLQSVVTIGVVACTM 56

Query: 61  L---------IAVGLCVAASALLWWVVERLKANPIIAGL-------GLTGL--GLGGTSL 102
           +         ++VG  VA S ++  V+       I+ GL       G+ GL  G+     
Sbjct: 57  MFCLASRDFDLSVGSTVAFSGMVA-VMASNATGSIVLGLLAALACGGIVGLANGIVIARF 115

Query: 103 AIQALYDSEATVTAPFGIPKLNS---LFGADLGPFGGLSVFVLL-MPVAVWLVWL----- 153
            I AL  + AT+    G   + S     G +   F  LS+   L +P  +W++ L     
Sbjct: 116 RINALITTLATMQIVRGFALIASDGRAVGINDPVFYQLSLSKFLTVPTPIWVMALFFIVF 175

Query: 154 --LLERTRLGLQMSASGEHPFAARSVGVNPSRMRLLALALGGVLCAIGGAELAGGSLQIF 211
             LL RT  G    A G +P A+R  GV+ +RMR+   AL G++CA+ G  LA   +   
Sbjct: 176 GFLLNRTVFGKNTLAIGGNPEASRLAGVDVARMRIWIFALQGLVCAVAGVLLA-SRITSG 234

Query: 212 SQNMTAGRGFMAFAAVIFGAGGALGATAAALFFAVVSAL 250
             N   G      +A + G G +L    A +   VV  L
Sbjct: 235 QPNAATGLELSVISACVLG-GVSLAGGRATMTGVVVGVL 272