Pairwise Alignments

Query, 648 a.a., Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) from Variovorax sp. SCN45

Subject, 392 a.a., reverse transcriptasematurase from Sinorhizobium meliloti 1021

 Score = 56.6 bits (135), Expect = 2e-12
 Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 24/213 (11%)

Query: 188 QRFTIAKKSGGERHISAPMPRMKRAQYWVLDNI--LAKMPVHDAVHGFLPGRS-----IL 240
           +R TI K  GGER +  P    +  Q  +L  +  L      +  HGF PGRS     + 
Sbjct: 44  RRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPLLDPAFSEHSHGFRPGRSAHGAVLA 103

Query: 241 TNAAPHVGQDVVINLDLKDFFPSIGMRRVRGVFRQLGYSSQVASLLALVCTEAPTDEVQL 300
             +    G+ +V+++DL+ FF  +    +     +     +V  L+         D   +
Sbjct: 104 AQSLVQSGRRIVVDVDLEKFFDRVNHDILIDRLSKRISDKRVIRLIRAYLNSGIMDHGVV 163

Query: 301 DGRRYFVARGERVL--PQGAPTSPMLTNLLCRRLDARLAASAAKLGFRYTRYADDLSFSA 358
                     ERV+  PQG P SP+L N+L   +D  L     + G  + RYADD +   
Sbjct: 164 Q---------ERVMGTPQGGPLSPLLANVLLDEVDKEL----ERRGHCFVRYADDCNVYV 210

Query: 359 GPAHSRDTAKLLWRVKQIVASEGLTVHPDKQQV 391
           G   + +    L  ++++     LT++  K  V
Sbjct: 211 GSRKAGERVMAL--LRRLYGRLHLTINEGKSAV 241