Pairwise Alignments

Query, 142 a.a., 3'-to-5' exoribonuclease RNase R from Variovorax sp. SCN45

Subject, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

 Score = 43.5 bits (101), Expect = 5e-09
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 12/122 (9%)

Query: 2   QMAALALQCSERERRADEAEREVDERYRAAWME-QHVGGEFDGVISGVTSFGLFIELDDS 60
           ++  + L   E  RR     ++       ++ E Q  G +  G I  +T FG+FI L+  
Sbjct: 327 EVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGG 386

Query: 61  KVNGLVHVTQLPHDYYHFDPIRKTLSGERTGREYRLGDRVRIVVLKASVEDRKIDFKLVD 120
            ++GLVH++ +  +          + GE   RE++ GD +  VVL    E  +I   +  
Sbjct: 387 -IDGLVHLSDISWN----------VPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQ 435

Query: 121 EE 122
            E
Sbjct: 436 ME 437



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 38  GGEFDGVISGVTSFGLFIELDDSKVNGLVHVTQLPHDYYHFDPIRKTLSGERTGREYRLG 97
           G +  G ++ +T +G F+E+++  V GLVHV+++     +  P           +   +G
Sbjct: 277 GHKLSGRVTNLTDYGCFVEIEEG-VEGLVHVSEMDWTNKNIHP----------SKVVNVG 325

Query: 98  DRVRIVVLKASVEDRKIDFKL 118
           D V ++VL    E R+I   L
Sbjct: 326 DEVEVMVLDIDEERRRISLGL 346



 Score = 30.4 bits (67), Expect = 4e-05
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 38  GGEFDGVISGVTSFGLFIELDDSKVNGLVHVTQL 71
           G E  G++  +T +G F++L    V+GL+H+T +
Sbjct: 192 GTEVKGIVKNLTDYGAFVDL--GGVDGLLHITDM 223