Pairwise Alignments

Query, 151 a.a., Type IV fimbrial assembly protein PilC from Variovorax sp. SCN45

Subject, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 39/147 (26%), Positives = 80/147 (54%)

Query: 1   RAMLKIPVVGQILHNAAVARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRD 60
           R ++ +PV+G+I      ARFARTL++   + +P+++ +        N   ++ V    +
Sbjct: 254 RRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQFVKQQVLAAAE 313

Query: 61  DVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSL 120
           +V  G  +  A++Q  LFP M++ M A GE++G L+ ML + A+  +    + V+    +
Sbjct: 314 NVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNSFESTVNIALGI 373

Query: 121 LEPLIMIILGVIVGGMVVAMYLPIFKL 147
             P ++ ++  +V  +V+A  +PI ++
Sbjct: 374 FTPALIALMAGMVLFIVMATLMPILEM 400



 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 1/127 (0%)

Query: 18  VARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRDDVSVGYQVNMAMKQV-N 76
           +A   R LA   ++G+PL E L  VA  +        +  +R  V+ GY ++ ++    +
Sbjct: 68  LALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPH 127

Query: 77  LFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIILGVIVGGM 136
           +F  +   M A GE++G LD++L ++A++ E           +++ P+++++  V +   
Sbjct: 128 VFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVGIVAF 187

Query: 137 VVAMYLP 143
           ++A  +P
Sbjct: 188 LLAAVVP 194