Pairwise Alignments

Query, 151 a.a., Type IV fimbrial assembly protein PilC from Variovorax sp. SCN45

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  155 bits (393), Expect = 5e-43
 Identities = 75/151 (49%), Positives = 105/151 (69%)

Query: 1   RAMLKIPVVGQILHNAAVARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRD 60
           R  LK P++G +L  A++A+F+RTLA +F AG+P++ +L T A  +GNV +E A+  +  
Sbjct: 257 RLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYR 316

Query: 61  DVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSL 120
           D + G  + +AM+    FP MV+QM  IGEE+G LD ML KVA  YE EV+N VD L  +
Sbjct: 317 DTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKI 376

Query: 121 LEPLIMIILGVIVGGMVVAMYLPIFKLAATI 151
           LEPLI++ LG +VGG+VVAMYLPIF L + +
Sbjct: 377 LEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407



 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 23  RTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRDDVSVGYQVNMAMKQVNL-FPHM 81
           R LA     GVP+V+AL  V         +  + +I   V  G  ++ AM+  +  F  +
Sbjct: 75  RQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTL 134

Query: 82  VIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIILGVIVGGMVVAMY 141
            + +   GE +G L  +  ++A + E+        + +L+ P +++++ + V  +++ M 
Sbjct: 135 YVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMV 194

Query: 142 LPIFK 146
           +P F+
Sbjct: 195 IPEFE 199