Pairwise Alignments

Query, 151 a.a., Type IV fimbrial assembly protein PilC from Variovorax sp. SCN45

Subject, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  102 bits (253), Expect = 9e-27
 Identities = 46/142 (32%), Positives = 92/142 (64%)

Query: 4   LKIPVVGQILHNAAVARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRDDVS 63
           L++P+VG I++ A ++RFART ++   AGVPL ++L   A A  N   E+ +  ++  + 
Sbjct: 258 LRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNKFLEQRILEMKSQIE 317

Query: 64  VGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEP 123
            G  V+      N+F  +VIQM ++GEE G +D +L++V++FY++EV+  +  L++ +EP
Sbjct: 318 SGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDREVDYDLKTLTARIEP 377

Query: 124 LIMIILGVIVGGMVVAMYLPIF 145
           ++++ +  +V  + + ++LP++
Sbjct: 378 ILLVFVAAMVLVLALGIFLPMW 399



 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 30/126 (23%), Positives = 64/126 (50%), Gaps = 1/126 (0%)

Query: 21  FARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRDDVSVGYQVNMAMK-QVNLFP 79
           F R +    +AGVPL+ ++  +A    N   + A+  + ++++ G  ++ +M+    +F 
Sbjct: 72  FCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASMQLHPAIFS 131

Query: 80  HMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIILGVIVGGMVVA 139
            + + M  +GE  G LD  L+++A +YEQEV       +++  P  +I   ++   ++  
Sbjct: 132 PLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVLLAMFILNV 191

Query: 140 MYLPIF 145
             +P F
Sbjct: 192 KVIPQF 197