Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 174 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 52.4 bits (124), Expect = 4e-12
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 11/137 (8%)

Query: 31  SDDVADDVLHETWLRVNRMSDPGPVASPMAYLLRIASNVAEDR---RIANGRLLDFV--- 84
           ++++  DV  + W + + M     + +  AYL R+  N   D    ++   + ++ V   
Sbjct: 28  AENITQDVFTDLWAKRDSMDR---IENMNAYLFRLIKNRCLDHLKHKMFEQKYIESVQTS 84

Query: 85  -EVEELLHFADDSR-DPARVSEARSEVQALERALEELPRRRREIFLASRVDETPHKDIAL 142
            E+E  L     +R D + +SE       +  A+  LPR+ R+IFL SRV+   +++I+ 
Sbjct: 85  FEIEMSLKLQSLNRFDVSDISEGNETEMLVRNAINSLPRKCRDIFLLSRVEGLKYREISE 144

Query: 143 RYGVSVRIVEREVKAAL 159
           R G+SV  VE ++  AL
Sbjct: 145 RLGISVNTVECQMGIAL 161