Pairwise Alignments

Query, 615 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 1000 a.a., cyclic nucleotide-binding domain (cNMP-BD) protein from Synechococcus elongatus PCC 7942

 Score =  140 bits (352), Expect = 3e-37
 Identities = 149/586 (25%), Positives = 253/586 (43%), Gaps = 45/586 (7%)

Query: 27  WHFAAGARAQLLGATALLASS--QLIRLALPYLAGQAIN-ALQRGELNGAGRWIAALAGV 83
           W + +  R ++     L+AS   QL  LA P +  Q I+  + +G LN    +   L  +
Sbjct: 431 WFWPSIQRYRVRLIEVLIASLVVQLFTLANPLIIQQVIDKVIGQGSLNNLNSFAVLLVIL 490

Query: 84  YVGAWALHGPGRILERNVGMRVRETLADQLYARIAAAPLAWHDGHHSGQLQHRVHQASRA 143
            V    L      L  +   R+   L   +  R+   PL + +    G+L  RV +  + 
Sbjct: 491 GVFQGLLSSLRTYLFADTTNRIDLKLGSDIIDRLLKLPLRYFERRPVGELSSRVQELEKI 550

Query: 144 LSDFAQNQFIWLTNAVNFVGPLVALALLSRTSGVTALAGYVLIGLVIVRIDRALMKLARA 203
            S         + +A+  V  ++ + + S    + AL+   +   +       + +  R 
Sbjct: 551 RSFLTGTALTTVMDAMFSVIYILVMLVYSWFLTLVALSTVPIFVAITFFASPVVRRQLRE 610

Query: 204 ENDADRRYVAALLDFLGNASTVIGLRLQGASRLLLRRR----MAAISLPLKRTVVLNEGK 259
           + + +    + L++ L    TV    ++  +R   + R    +AA    +  +   +   
Sbjct: 611 KAERNAETQSQLVEVLSGIQTVKAQNIELKARWQWQERYARYIAAGFRNINTSTAASSLT 670

Query: 260 WFAVDLMGLALTWGLVVVYVWQARAPGQAVMLGAVFMIYQYAQQAAGVVTSVAANFSFFA 319
            F   L GL + W  V +      + GQ +   A  +I  Y  Q    +  +  NF   A
Sbjct: 671 NFFNQLSGLLVLWVGVYLVFDNQLSLGQLI---AFRIISGYVTQPLLRLAQLWQNFQETA 727

Query: 320 RMHTDYSSAEPIWQAPSGDVAASVPEQVPEQVPERERIDATAVWSRIDVDGLQWRYAARG 379
                  S E +      D+  +  E   +   ++ +I    +  +++   L +R+  +G
Sbjct: 728 L------SLERL-----ADIVDTPQESDDD---DQGKIPMPMINGKVEFRNLSFRFGEQG 773

Query: 380 EQQTEAADPVTVRSSGLHDVKLSLRRGERVALVGPSGGGKSTLLRVLAGLYPPDSGSLSL 439
             Q             L +V L +  GE V +VG SG GKSTL+++L  LY P  G + +
Sbjct: 774 PLQ-------------LSNVTLEIPAGEYVGIVGQSGSGKSTLMKLLPRLYSPLEGEILI 820

Query: 440 DG---RPVDWTQLRRLATLIPQETELFEASVRENLAFGQPR--DDAQLLAALHTSTFDEV 494
           DG     V+   LRR   ++PQ++ LF+ +V EN++  +P    D  + AA      D +
Sbjct: 821 DGYDISKVELYSLRRQIGIVPQDSLLFQGTVEENISLTKPNATTDEIITAAKAAGAHDFI 880

Query: 495 LKANHGDLDTAVSERGFNLSGGQRQRLCLARGVLAAQGSSLLLLDEPTSALDAGTEARVL 554
           +    G  +T V ERG  LSGGQRQR+ +AR VL  Q   LL+LDE TSALD  TE +V 
Sbjct: 881 MTLPLG-YNTRVGERGGALSGGQRQRIAIARTVL--QNPQLLILDEATSALDYDTERQVS 937

Query: 555 ERIAGAFPDACVVASIHRLSLLERFDTVVLMEAGHVVDYGPRDAVL 600
             +   F    V    HRLS +   D +++M+ G +V+ G  D ++
Sbjct: 938 INLQQHFRGKTVFFITHRLSTVRHADRIIVMDKGAMVEQGSHDELM 983