Pairwise Alignments

Query, 203 a.a., Na+-driven multidrug efflux pump from Variovorax sp. SCN45

Subject, 460 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 62.8 bits (151), Expect = 1e-14
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 20  VIMLLFVINAILRGAGDAAISMRVLWLSNGLNIVLCPLLIFGPGPFPALGIEGAAIATCI 79
           +++L    N+ +R  GD     +++ L+  +N  L PLLIFG GPFP LGI+GAAIA+  
Sbjct: 157 LLVLPMAGNSAIRATGDTKTPAKIMMLAGLINGALDPLLIFGYGPFPELGIQGAAIASAF 216

Query: 80  GRGTGVLYQLWALFRGGTHIRV-TMAQLA--WRGAMLWNIVRTSLGGIGQMIVAMT--AW 134
                ++  L+ L +    + + ++  L   W+  +        +G    +  AM   + 
Sbjct: 217 SWLGALIGSLYLLIKREKLLAIPSLPHLRDDWQQIL-------KIGTPAALSTAMNPISG 269

Query: 135 IFLMRILATIGSEAVAGATIAIRIMMFTMMPAWGMSNAAATLVGQNLGAGHADRA 189
             LM +L++ G+ AVA      RI    ++    +++A    + QNLGA +  R+
Sbjct: 270 ALLMIMLSSHGTAAVAAYGATQRIESILILVLMSLTSALTPFMAQNLGAQNPARS 324