Pairwise Alignments

Query, 203 a.a., Na+-driven multidrug efflux pump from Variovorax sp. SCN45

Subject, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 54.3 bits (129), Expect = 3e-12
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 17/183 (9%)

Query: 15  LGSNAVIMLLFVINAI---------LRGAGDAAISMRVLWLSNGLNIVLCPLLIFGPGPF 65
           LGS  +I+  F + A+         LR      +S     +    N+VL  +LIFG   F
Sbjct: 134 LGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGF 193

Query: 66  PALGIEGAAIATCIGRGTGVLYQLWALFRGGTHIRV-----TMAQLAWRGAMLWNIVRTS 120
           PA+GI+GAAIAT +  G   +  L++   G  H+         A + W    +   +R S
Sbjct: 194 PAMGIQGAAIATVLS-GAIEIACLYSYLYGKKHLMAFGWQDIKAVIDW--PKISRFLRLS 250

Query: 121 LGGIGQMIVAMTAWIFLMRILATIGSEAVAGATIAIRIMMFTMMPAWGMSNAAATLVGQN 180
           L      ++          I+   G + +A  ++   +   ++    GMS AAA LVG  
Sbjct: 251 LPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQ 310

Query: 181 LGA 183
           LGA
Sbjct: 311 LGA 313