Pairwise Alignments

Query, 116 a.a., RNA polymerase sigma factor RpoH from Variovorax sp. SCN45

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score = 78.6 bits (192), Expect = 7e-20
 Identities = 44/98 (44%), Positives = 65/98 (66%), Gaps = 6/98 (6%)

Query: 23  SLDA---YIGAVHQIPVLTVEDEQALARR-FRDEEDLDAARELIHSHLRFVVHVARGYNG 78
           SLDA   Y+  +   P+LT E+E   ARR  R +E   A + +I S+LR VV ++R Y+ 
Sbjct: 55  SLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEA--ARKRMIESNLRLVVKISRRYSN 112

Query: 79  YGLQIGDLIQEGNIGLMKAVKRFDPEQGVRLVSFAVHW 116
            GL + DLI+EGN+GL++AV++FDPE+G R  ++A  W
Sbjct: 113 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 150