Pairwise Alignments

Query, 116 a.a., RNA polymerase sigma factor RpoH from Variovorax sp. SCN45

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score = 65.1 bits (157), Expect = 1e-15
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 31  VHQIPVLTVEDEQALARRFR--DEEDLDAARELIHSHLRFVVHVARGYNGYGLQIGDLIQ 88
           + Q   L+VE  + ++RR    + +   A +E++ ++LR V+ +A+ Y   GLQ  DLIQ
Sbjct: 359 IEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 418

Query: 89  EGNIGLMKAVKRFDPEQGVRLVSFAVHW 116
           EGNIGLMKAV +F+  +G +  ++A  W
Sbjct: 419 EGNIGLMKAVDKFEYRRGYKFSTYATWW 446