Pairwise Alignments

Query, 116 a.a., RNA polymerase sigma factor RpoH from Variovorax sp. SCN45

Subject, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

 Score =  135 bits (339), Expect = 5e-37
 Identities = 70/116 (60%), Positives = 88/116 (75%), Gaps = 8/116 (6%)

Query: 1   MTSIAQSQALVANNLPVPSALGSLDAYIGAVHQIPVLTVEDEQALARRFRDEEDLDAARE 60
           MT+ A   ALV+ +        SLD+YI +V+  P+L+ ++E+ LA R   + D+DAA+ 
Sbjct: 1   MTNQAYPMALVSQD--------SLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKG 52

Query: 61  LIHSHLRFVVHVARGYNGYGLQIGDLIQEGNIGLMKAVKRFDPEQGVRLVSFAVHW 116
           LI SHLRFVVHVARGY+GYGL + DL+QEGNIGLMKAVKRF+PE GVRLVSFAVHW
Sbjct: 53  LILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108