Pairwise Alignments

Query, 632 a.a., Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB from Variovorax sp. SCN45

Subject, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

 Score =  318 bits (814), Expect = 5e-91
 Identities = 202/547 (36%), Positives = 311/547 (56%), Gaps = 55/547 (10%)

Query: 84  LVNLNLFPAAADALRKVGHGVARRLQVMPLMLHQGRLVVALDDPSSRHSA--LEEIEFIA 141
           +  + + PA   ++R++    A R           +LV+  ++  S+ S   L  +   A
Sbjct: 1   MTEMVISPAERQSIRRLPFSFANRF----------KLVLDWNEDFSQASIYYLAPLSMEA 50

Query: 142 QMKVTPVVGQCLDLDSVLGAAYEKIGEPSIGIFSTNVDPGRPLEFDLAGTSELLQTLEKE 201
            ++   VV     L  +  A +E        ++  +    R L  D+   S+   +L +E
Sbjct: 51  LVETKRVVKHAFQLIELSQAEFES---KLTQVYQRDSSEARQLMEDIGADSDDFFSLAEE 107

Query: 202 GPASAPPAEAPIEQSDNSLVRMINSMILEAHREGASDIHIESYPGQEKT-RIRFRRDGLL 260
            P +    E+   + D  ++++IN+M+ EA +EGASDIHIE++   EKT  IRFR DG+L
Sbjct: 108 LPQNEDLLES---EDDAPIIKLINAMLGEAIKEGASDIHIETF---EKTLSIRFRVDGVL 161

Query: 261 YTYLELPPSYRNAIVARVKIMCDLDISEKRNPQDGKINFAKYSPQHRIELRVATIPTNNG 320
              L       + +V+RVK+M  LDI+EKR PQDG+I+         +++RV+T+P+++G
Sbjct: 162 REVLAPSRKLSSLLVSRVKVMAKLDIAEKRVPQDGRISLRIGG--RAVDVRVSTMPSSHG 219

Query: 321 LEDVVMRIL-ASSKPIPMSELGLSPNNLAQLTKAVERPYGMVLCVGPTGSGKTTTLHSAL 379
            E VVMR+L  ++  + +  LG++ +N     + ++RP+G++L  GPTGSGK+TTL++ L
Sbjct: 220 -ERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGL 278

Query: 380 MQINTPERKIWTAEDPVEITQPGLRQVQINPRIDWTFAKALRAFVRADPDVIMVGEIRDE 439
            ++N+ ER I T EDP+E    G+ Q Q+NPR+D TFA+ LRA +R DPDV+MVGEIRD 
Sbjct: 279 QELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDL 338

Query: 440 ETAKTAIEASLTGHLVLSTLHTNSAPETVTRLLDMGMDPFNFADSLLAVLAQRLVRRLCS 499
           ETA+ A++ASLTGHLV+STLHTN+A   VTRL DMG++PF  + SLL VLAQRLVR LC 
Sbjct: 339 ETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCP 398

Query: 500 RCTSSSPASSERIEELLDDYLHAFGTREDDAGRQRNAVRDVWLRRYGREGRLHAYTSVGC 559
            C     A  E+  +L D                             ++  L  Y + GC
Sbjct: 399 DCKEPYEADKEQ-RKLFDS---------------------------KKKEPLILYRATGC 430

Query: 560 KHCGGTGFKGRVGIHELMVMSKTLRRLVQTGARAEELQLAALQEGMRTLRQDGIEKVLAG 619
             C   G++GR GIHEL+++   L+ L+ + A  E+     ++    ++R DG++KV  G
Sbjct: 431 PKCNHKGYRGRTGIHELLLVDDALQELIHSEA-GEQAMEKHIRATTPSIRDDGLDKVRQG 489

Query: 620 HTTVEEV 626
            T++EEV
Sbjct: 490 ITSLEEV 496