Pairwise Alignments

Query, 282 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  288 bits (738), Expect = 2e-82
 Identities = 152/287 (52%), Positives = 193/287 (67%), Gaps = 5/287 (1%)

Query: 1   QAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLLHRL-----ATAAPQGGPRKPRALILAP 55
           Q  AIP  + G DL+  AQTGTGKT  F LP+L RL        + + GPR+PR L+L P
Sbjct: 28  QQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHGPRQPRVLVLTP 87

Query: 56  TRELALQVSDSLRGYAKYLRLNVHAIYGGAGMGPQLDALRRGVDVLVATPGRLIDHLERG 115
           TRELA QV +S + YA+ L+     I+GG GM PQ+ A+ RGVDVLVA PGRL+D   +G
Sbjct: 88  TRELAAQVHESFKVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQG 147

Query: 116 SAKLDAVELLVMDEADRMLDMGFLPAIKRILGRLPASRQTLLFSATFEAQIKQLALEFMR 175
           S  L  VE+LV+DEADRMLDMGF+  +K++L RLPA RQ LLFSATF   I  LA + + 
Sbjct: 148 SVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLH 207

Query: 176 APQQVQIAANNVVADAISHRVHPVDGGRKRDLLIQILASRPNDQVIVFGRTKHGCNRLAE 235
            P+++++   N   + I  RV  +    KR LL  ++ +   +QV+VF RTKHG NRLAE
Sbjct: 208 NPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAE 267

Query: 236 QLEDAGLKSVAIHGNKSQAQRQKALRDFKANKARVLVATDVAARGLD 282
            L+  GL +VAIHGNKSQ  R KAL DFKA + R+LVATD+AARGLD
Sbjct: 268 YLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRILVATDIAARGLD 314