Pairwise Alignments

Query, 282 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  292 bits (748), Expect = 7e-84
 Identities = 156/284 (54%), Positives = 202/284 (71%), Gaps = 2/284 (0%)

Query: 1   QAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLLHRLATAAPQ--GGPRKPRALILAPTRE 58
           Q +AIP  + G D+L GAQTGTGKTAAFGLPL+ R      Q     ++ RAL+L PTRE
Sbjct: 33  QQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEIRALVLVPTRE 92

Query: 59  LALQVSDSLRGYAKYLRLNVHAIYGGAGMGPQLDALRRGVDVLVATPGRLIDHLERGSAK 118
           LA QV DSL+ YAK   L + A+YGG  M  QL+ LR GVD+L+ATPGRL+DH    S  
Sbjct: 93  LAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLF 152

Query: 119 LDAVELLVMDEADRMLDMGFLPAIKRILGRLPASRQTLLFSATFEAQIKQLALEFMRAPQ 178
           L  VE+LV+DEADRMLDMGF+P ++R+L RL   RQTL FSATF+++IK +A   MR P 
Sbjct: 153 LGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPI 212

Query: 179 QVQIAANNVVADAISHRVHPVDGGRKRDLLIQILASRPNDQVIVFGRTKHGCNRLAEQLE 238
           +VQ+  +N  A+ +   V+PVD  RKR+LL  ++ S+   QV+VF +T+ G + LAE+L+
Sbjct: 213 EVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELK 272

Query: 239 DAGLKSVAIHGNKSQAQRQKALRDFKANKARVLVATDVAARGLD 282
             G+K+V+I+G+KSQ  RQKAL DFKA K R L+ATDVAARGLD
Sbjct: 273 LDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316