Pairwise Alignments

Query, 282 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  268 bits (684), Expect = 2e-76
 Identities = 137/282 (48%), Positives = 189/282 (67%), Gaps = 1/282 (0%)

Query: 1   QAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLLHRLATAAPQGGPRKPRALILAPTRELA 60
           Q +AIP  +AG D++  AQTGTGKTA F LP+L  LA   P+    + RALIL PTRELA
Sbjct: 28  QLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKG-PKVRANQVRALILTPTRELA 86

Query: 61  LQVSDSLRGYAKYLRLNVHAIYGGAGMGPQLDALRRGVDVLVATPGRLIDHLERGSAKLD 120
            Q+ D++  Y ++L L    ++GG  + PQ+  + +G D+LVATPGRL+D   + + K D
Sbjct: 87  AQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFD 146

Query: 121 AVELLVMDEADRMLDMGFLPAIKRILGRLPASRQTLLFSATFEAQIKQLALEFMRAPQQV 180
            +E+LV+DEADRMLDMGF+  I +IL  LP  RQ LLFSATF  +I++LA   +  P ++
Sbjct: 147 QLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEI 206

Query: 181 QIAANNVVADAISHRVHPVDGGRKRDLLIQILASRPNDQVIVFGRTKHGCNRLAEQLEDA 240
            ++  N  A  +   ++P D  +K D+L++++      QV+VF RTKHG NRLA  L + 
Sbjct: 207 SVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQ 266

Query: 241 GLKSVAIHGNKSQAQRQKALRDFKANKARVLVATDVAARGLD 282
           GL + AIHGNKSQ  R +AL DFKA + R+LVATD+AARG+D
Sbjct: 267 GLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGID 308