Pairwise Alignments

Query, 282 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  231 bits (589), Expect = 2e-65
 Identities = 128/282 (45%), Positives = 177/282 (62%), Gaps = 1/282 (0%)

Query: 1   QAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLLHRLATAAPQGGPRKPRALILAPTRELA 60
           Q +AIP+ + G DL+  AQTGTGKTA+F LP+L +L     Q   ++ RALIL PTRELA
Sbjct: 28  QTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQR-KKRVRALILVPTRELA 86

Query: 61  LQVSDSLRGYAKYLRLNVHAIYGGAGMGPQLDALRRGVDVLVATPGRLIDHLERGSAKLD 120
           +QV++ +  Y K   L   A++GG     Q   L  GVDVLVATPGRL+D   + +   +
Sbjct: 87  MQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFE 146

Query: 121 AVELLVMDEADRMLDMGFLPAIKRILGRLPASRQTLLFSATFEAQIKQLALEFMRAPQQV 180
            +E++V+DEADRMLDMGF+ +I +I+  LP+  Q LLFSAT   ++++LA   +R P ++
Sbjct: 147 EIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEI 206

Query: 181 QIAANNVVADAISHRVHPVDGGRKRDLLIQILASRPNDQVIVFGRTKHGCNRLAEQLEDA 240
            IAAN      IS  +  VD   K  LL  ++  +  DQ ++F  TKHG  +L  QLE  
Sbjct: 207 SIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKR 266

Query: 241 GLKSVAIHGNKSQAQRQKALRDFKANKARVLVATDVAARGLD 282
           G+ + A H  +SQA R + L DFK+ K + LVAT VAARG+D
Sbjct: 267 GIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308