Pairwise Alignments

Query, 282 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  256 bits (654), Expect = 7e-73
 Identities = 134/283 (47%), Positives = 188/283 (66%), Gaps = 1/283 (0%)

Query: 1   QAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLLHRLATAAPQGGPRKPRALILAPTRELA 60
           QA+AIPL +  HDL+G AQTGTGKTAAFGLP++ +L     +  PR  RAL+LAPTREL 
Sbjct: 29  QAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEKLVADGRRPDPRNIRALVLAPTRELV 88

Query: 61  LQVSDSLRGYAKYLRLNVHAIYGGAGMGPQLDALRRGVDVLVATPGRLIDHLERGSAKLD 120
            Q++ +L+ + K   L +  + GG  +  Q + L RGVD+LVATPGRL+D + R +  L 
Sbjct: 89  NQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLARGVDILVATPGRLLDLVSRKAVTLT 148

Query: 121 AVELLVMDEADRMLDMGFLPAIKRILGRLPASRQTLLFSATFEAQIKQLALEFMRAPQQV 180
               LV+DEAD+MLD+GF+  +++I   +P +RQTLLFSAT    I +LA E++  P +V
Sbjct: 149 QARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIAELAGEYLTDPVKV 208

Query: 181 QIAANNVVADAISHRVHPVDG-GRKRDLLIQILASRPNDQVIVFGRTKHGCNRLAEQLED 239
           +++     AD +   VH V G   K  +L Q L + P+   ++F RTKHG  +L + L+ 
Sbjct: 209 EVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRTKHGAEKLMKHLDH 268

Query: 240 AGLKSVAIHGNKSQAQRQKALRDFKANKARVLVATDVAARGLD 282
            G K+ +IHGNKSQ QR++AL+ F+  + RVLVATDVAARG+D
Sbjct: 269 VGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGID 311