Pairwise Alignments

Query, 282 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 393 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  251 bits (642), Expect = 1e-71
 Identities = 142/284 (50%), Positives = 187/284 (65%), Gaps = 2/284 (0%)

Query: 1   QAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLLHRLATAAPQGGPRKPRALILAPTRELA 60
           QA AIP  + G D+LG AQTGTGKTA+F LPLL RL        P +PRALIL PTRELA
Sbjct: 29  QAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQRLTKDPQPRVPGRPRALILTPTRELA 88

Query: 61  LQVSDSLRGYAKYLR-LNVHAIYGGAGMGPQLDALRRGVDVLVATPGRLIDHLERGSAKL 119
            Q+++S+    + L  +    + GG  +  Q   ++RG+++LVATPGRL D + R +  L
Sbjct: 89  QQITESIGDLGRTLSAIRCGVVVGGVDILRQTRMVQRGLEILVATPGRLQDLMNRKAVDL 148

Query: 120 DAVELLVMDEADRMLDMGFLPAIKRILGRLPASRQTLLFSATFEAQIKQLALEFMRAPQQ 179
            A+E+LV+DEADRMLDMGF PA+K+I   LP  RQT++FSAT   ++  L    M  P +
Sbjct: 149 RAIEVLVLDEADRMLDMGFAPAVKKIAAVLPRKRQTVMFSATLPNEVTGLVASLMNDPVR 208

Query: 180 VQIAANNVVADAISHRVHPVDGGRKRDLLIQILA-SRPNDQVIVFGRTKHGCNRLAEQLE 238
           V++A    VA+ I  RV  V+   KR LL+ +L  +R  ++ IVF RTKHG N+L   L 
Sbjct: 209 VEVAPAASVANRIDQRVLFVEQTNKRKLLLDLLGDARKVERAIVFTRTKHGANKLGIFLL 268

Query: 239 DAGLKSVAIHGNKSQAQRQKALRDFKANKARVLVATDVAARGLD 282
           + G+KS  IHGNKSQ  RQ+AL DFK+ K R LVATD+AARG+D
Sbjct: 269 EYGVKSDVIHGNKSQGARQRALNDFKSGKVRALVATDIAARGID 312