Pairwise Alignments

Query, 282 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  239 bits (609), Expect = 1e-67
 Identities = 128/283 (45%), Positives = 184/283 (65%), Gaps = 6/283 (2%)

Query: 1   QAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLLHRLATAAPQGGPRKPRALILAPTRELA 60
           QA +I   MAG D+LG AQTGTGKT AF LPLL+ +           P+ L+LAPTRELA
Sbjct: 33  QAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNAI-----DPNRNVPQILVLAPTRELA 87

Query: 61  LQVSDSLRGYAKYLR-LNVHAIYGGAGMGPQLDALRRGVDVLVATPGRLIDHLERGSAKL 119
           +QV+++   Y+K+++ L+V  IYGG  M  QL+ALRRG  ++V TPGR++DH+ RG+ KL
Sbjct: 88  VQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNALRRGPQIVVGTPGRVMDHMRRGTLKL 147

Query: 120 DAVELLVMDEADRMLDMGFLPAIKRILGRLPASRQTLLFSATFEAQIKQLALEFMRAPQQ 179
           + +  LV+DEAD ML MGF+  I+ IL   P  RQ  LFSAT   QIK++A ++++ P  
Sbjct: 148 ETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQLALFSATMPEQIKRVANKYLQTPVH 207

Query: 180 VQIAANNVVADAISHRVHPVDGGRKRDLLIQILASRPNDQVIVFGRTKHGCNRLAEQLED 239
           + IAA++   ++I  R   V    K + L+++L     + +I+F RT++ C  LAE+LE 
Sbjct: 208 ISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEA 267

Query: 240 AGLKSVAIHGNKSQAQRQKALRDFKANKARVLVATDVAARGLD 282
            G  S  +HG+ +Q  R++A+   K  K  +L+ATDVAARGLD
Sbjct: 268 RGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLD 310