Pairwise Alignments

Query, 208 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score =  145 bits (367), Expect = 2e-39
 Identities = 80/212 (37%), Positives = 122/212 (57%), Gaps = 4/212 (1%)

Query: 1   MSAP-FVHLHLHSEYSLADSTLRIGELVKRCVALGQPAVALTDLDNIFAAVKFYKACEGA 59
           MS P F+HL +HS++S+ D   ++  LVK+  A+G PA+ALTD  N+   VKFY      
Sbjct: 1   MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60

Query: 60  GIKPIIGADVHL--ADGNESASRLTLLCRDRGGYLSLSRLLSRAWMEGHRTEGVVLRPEW 117
           G+KPIIGAD  L   +  +  ++LTLL ++  GY +L+ L+S+A++ GH     V+   W
Sbjct: 61  GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120

Query: 118 LREDNDGLFALA-GRNSLAARLAASNREELAHAWLVDWQGVFGDRLHLELTRTQRDGEDA 176
           L E  +GL  L+ G++    R      ++     +  +Q  F D  +LEL RT R  E++
Sbjct: 121 LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180

Query: 177 FNAFALQAASKRGLPVVASNDARFLDRDGFEA 208
           +  FAL  A +  LPVVA+N+  F+  + FEA
Sbjct: 181 YLHFALDVAEQYDLPVVATNEVVFITEESFEA 212