Pairwise Alignments

Query, 227 a.a., Integrase/recombinase, RitA from Variovorax sp. SCN45

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 80.9 bits (198), Expect = 3e-20
 Identities = 72/228 (31%), Positives = 102/228 (44%), Gaps = 22/228 (9%)

Query: 1   MCWSLRAFLRYLHHTGL---NPHALAGCVPSIRRWNLVGLPTYLSAAQVQKVLDGCDQAS 57
           M  ++R   +YLH   +   +P AL        R     LP  LS AQV+ +L   D  S
Sbjct: 79  MLSAIRRLFQYLHREKVRADDPSALLVSPKLPTR-----LPKDLSEAQVEALLSAPDPQS 133

Query: 58  AVGRRDFAILMMLSKIGLRADEVATLTLDDIDWRAGDMLVRAKGRQRARMPIALDVGAAI 117
            +  RD A+L +L   GLR  E+ +LT++++  R G + V  KG +   +P+  +    I
Sbjct: 134 PLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAIEWI 193

Query: 118 VAYLQEGRPKSSCRQLFLRSLAPHTGFASASAITMIAKTALER-------AGIQGYAHQG 170
             +LQ+G      R L L        F S+    M  +T   R       AGI       
Sbjct: 194 ETFLQQG------RSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGID-VEKLS 246

Query: 171 AHIFRHSLATELLRAGATLSEIGHLLRHKSHDTTRIYAKVDIEALRTL 218
            H+ RH+ AT LL  GA L  +  LL H    TT+IY  V  E L+ L
Sbjct: 247 PHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQL 294