Pairwise Alignments

Query, 227 a.a., Integrase/recombinase, RitA from Variovorax sp. SCN45

Subject, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

 Score = 55.5 bits (132), Expect = 1e-12
 Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 12/215 (5%)

Query: 4   SLRAFLRYLHHTGLNPHALAGCVPSIRRWNLVGLPTYLSAAQVQKVLDGCDQASAVGRRD 63
           SLR+FL +L   G      A  V + R+     LP  L   ++ ++L+  D    +  RD
Sbjct: 88  SLRSFLDFLILRGELQANPAKGVSAPRKQRT--LPKNLDVDEMAQLLEVTDD-DPLSIRD 144

Query: 64  FAILMMLSKIGLRADEVATLTLDDIDWRAGDMLVRAKGRQRARMPIALDVGAAIVAYLQ- 122
            AI+ ++   GLR  E+ ++ + D++   G++ V  KG +  ++  A      +  +L+ 
Sbjct: 145 RAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKL 204

Query: 123 -EGRPKSSCRQLFLRSLAPHTGFASASAITMIAKTALERAGIQGYA-HQGAHIFRHSLAT 180
                 S+   LF+  L       S      + K   E    Q  A H   H  RHS AT
Sbjct: 205 RSQLADSAETALFVSKLGTRISHRS------VQKRMAEWGQKQAVASHISPHKLRHSFAT 258

Query: 181 ELLRAGATLSEIGHLLRHKSHDTTRIYAKVDIEAL 215
            +L +   L  +  LL H++  TT+IY  +D + L
Sbjct: 259 HMLESSNNLRAVQELLGHENIATTQIYTHLDFQHL 293