Pairwise Alignments

Query, 577 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 556 a.a., ABC transporter for D-Raffinose, ATPase component (from data) from Sinorhizobium meliloti 1021

 Score =  475 bits (1223), Expect = e-138
 Identities = 272/566 (48%), Positives = 363/566 (64%), Gaps = 49/566 (8%)

Query: 12  PLLDVRGLDVFFLGSNGPVQAVRGLDLTLQRGETLALVGESGCGKSTTALALLRLLAPGA 71
           P++D R + V F   NG VQAV+ +   L RGET+A+VGESG GKS TA  ++ LL+  A
Sbjct: 24  PVIDARKVAVSFKVENGTVQAVKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKRA 83

Query: 72  VL--RGSIQFDGRDILALSPAQLREVRGREISMIFQEPMTSLNPVHTIGTQIEETLRRHE 129
            +  +  I++DGRD+L  S  + R +RG  ISMIFQEPM+SLNPV+TIG+QI E +R H 
Sbjct: 84  TIAPQARIEYDGRDVLKFSKRERRALRGDRISMIFQEPMSSLNPVYTIGSQIIEAIRAHR 143

Query: 130 KLSALAARKRAIELLDLVRIPEPHQRIDDHPHNLSGGQRQRVMIAMAVACKPRLLVADEP 189
           ++S  AA +RA+ELL  V+IP+P  R++ +PH LSGGQRQRVMIAMA+A  P +L+ADEP
Sbjct: 144 RVSRRAAAERALELLRHVQIPDPEARLNQYPHQLSGGQRQRVMIAMALANDPDVLIADEP 203

Query: 190 TTALDVTIQAQILELLDGLRRELDMALLLITHDLGLVAQWADRVAVMYGGEKVEEASTSR 249
           TTALDVT+QAQIL L+  L++EL MA++LITHDL +V Q++D V VM  GE  E  +T  
Sbjct: 204 TTALDVTVQAQILNLIRKLQQELGMAVILITHDLTVVRQFSDYVYVMQLGEVKEHNTTEA 263

Query: 250 LFAAPSHAYTRGLLGASLHAGSALHYVDARLPEIQTRLDAATGERSFALHVPEPNSKVRA 309
           LFA P HAYTR LL +                                    EP+     
Sbjct: 264 LFADPQHAYTRRLLSS------------------------------------EPSGSANP 287

Query: 310 LPVRTAAAEPLLSVQDLRTDYPKRGGGV-------LHAVDGVSFDIRAGETVGLVGESGC 362
           LP     A  LL  +++R  +  + GG        L AVDG+S ++R  ET+GLVGESG 
Sbjct: 288 LP---DDAPILLDGRNVRVSFTLKKGGFFRPEFKELVAVDGLSLNLRRHETLGLVGESGS 344

Query: 363 GKSTLSRTLLRLVNPASGRIVFDGTDIAQLSEKALKPWRRRVQMVFQDPYASLNPRRSVF 422
           GK+T  + L+RL+N   G I F+G  I     K ++P R ++Q+VFQDP++SLNPR SV 
Sbjct: 345 GKTTFGQALIRLLNTDGGEIYFEGEPIHDKDRKGMRPLRSKIQIVFQDPFSSLNPRMSVG 404

Query: 423 DIIESVLKVHGVAD-RAERRNRIAAILERVGLPADAGRRFPNEFSGGQRQRIGIARALVL 481
            IIE  L V+G+ + R +R  R+   L   G+P++   RFP+EFSGGQRQRI IARA+ L
Sbjct: 405 QIIEEGLIVNGMGENRKDRLKRVEDALVSAGMPSNILSRFPHEFSGGQRQRIAIARAVAL 464

Query: 482 RPSLVVLDEPVSALDVSVQAQILNLLVELKEDFGLSYLFISHDLSVVRYIADRVMVMSKG 541
            P  ++LDEP SALD+SVQAQI+ LL  L+++ GLSYL ISHDL VVR +  RV+VM  G
Sbjct: 465 EPEFILLDEPTSALDLSVQAQIIELLRRLQDERGLSYLVISHDLKVVRALCHRVVVMQDG 524

Query: 542 QIVETGSHRDIWDRPQHPYTRSLIAA 567
           +IVE G   ++ + P+  YT  L+ A
Sbjct: 525 KIVEEGPVSEVLNNPKTAYTERLVKA 550



 Score =  177 bits (449), Expect = 1e-48
 Identities = 98/259 (37%), Positives = 157/259 (60%), Gaps = 9/259 (3%)

Query: 319 PLLSVQDLRTDYPKRGGGVLHAVDGVSFDIRAGETVGLVGESGCGKSTLSRTLLRLVNPA 378
           P++  + +   + K   G + AV  VSF +  GETV +VGESG GKS  +RT++ L++  
Sbjct: 24  PVIDARKVAVSF-KVENGTVQAVKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKR 82

Query: 379 S-----GRIVFDGTDIAQLSEKALKPWRR-RVQMVFQDPYASLNPRRSVFDIIESVLKVH 432
           +      RI +DG D+ + S++  +  R  R+ M+FQ+P +SLNP  ++   I   ++ H
Sbjct: 83  ATIAPQARIEYDGRDVLKFSKRERRALRGDRISMIFQEPMSSLNPVYTIGSQIIEAIRAH 142

Query: 433 GVADRAERRNRIAAILERVGLPADAGR--RFPNEFSGGQRQRIGIARALVLRPSLVVLDE 490
               R     R   +L  V +P    R  ++P++ SGGQRQR+ IA AL   P +++ DE
Sbjct: 143 RRVSRRAAAERALELLRHVQIPDPEARLNQYPHQLSGGQRQRVMIAMALANDPDVLIADE 202

Query: 491 PVSALDVSVQAQILNLLVELKEDFGLSYLFISHDLSVVRYIADRVMVMSKGQIVETGSHR 550
           P +ALDV+VQAQILNL+ +L+++ G++ + I+HDL+VVR  +D V VM  G++ E  +  
Sbjct: 203 PTTALDVTVQAQILNLIRKLQQELGMAVILITHDLTVVRQFSDYVYVMQLGEVKEHNTTE 262

Query: 551 DIWDRPQHPYTRSLIAAVP 569
            ++  PQH YTR L+++ P
Sbjct: 263 ALFADPQHAYTRRLLSSEP 281



 Score =  162 bits (410), Expect = 3e-44
 Identities = 110/270 (40%), Positives = 149/270 (55%), Gaps = 13/270 (4%)

Query: 10  APPLLDVRGLDVFFLGSNG--------PVQAVRGLDLTLQRGETLALVGESGCGKSTTAL 61
           AP LLD R + V F    G         + AV GL L L+R ETL LVGESG GK+T   
Sbjct: 292 APILLDGRNVRVSFTLKKGGFFRPEFKELVAVDGLSLNLRRHETLGLVGESGSGKTTFGQ 351

Query: 62  ALLRLLAPGAVLRGSIQFDGRDILALSPAQLREVRGREISMIFQEPMTSLNPVHTIGTQI 121
           AL+RLL       G I F+G  I       +R +R + I ++FQ+P +SLNP  ++G  I
Sbjct: 352 ALIRLLNTDG---GEIYFEGEPIHDKDRKGMRPLRSK-IQIVFQDPFSSLNPRMSVGQII 407

Query: 122 EETLRRHEKLSALAARKRAIELLDLVRIPEPHQRIDDHPHNLSGGQRQRVMIAMAVACKP 181
           EE L  +        R + +E   LV    P   +   PH  SGGQRQR+ IA AVA +P
Sbjct: 408 EEGLIVNGMGENRKDRLKRVEDA-LVSAGMPSNILSRFPHEFSGGQRQRIAIARAVALEP 466

Query: 182 RLLVADEPTTALDVTIQAQILELLDGLRRELDMALLLITHDLGLVAQWADRVAVMYGGEK 241
             ++ DEPT+ALD+++QAQI+ELL  L+ E  ++ L+I+HDL +V     RV VM  G+ 
Sbjct: 467 EFILLDEPTSALDLSVQAQIIELLRRLQDERGLSYLVISHDLKVVRALCHRVVVMQDGKI 526

Query: 242 VEEASTSRLFAAPSHAYTRGLLGASLHAGS 271
           VEE   S +   P  AYT  L+ A+    +
Sbjct: 527 VEEGPVSEVLNNPKTAYTERLVKAAFEVAA 556