Pairwise Alignments

Query, 326 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 303 a.a., Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  198 bits (504), Expect = 1e-55
 Identities = 104/275 (37%), Positives = 167/275 (60%), Gaps = 6/275 (2%)

Query: 56  AFLRNPAAVAGVVLLVCMLILALLAPLLYPGDPLD-----MVAPPLLWPGQDAAYPLGSD 110
           AF RN  AVAG++ ++ ++  AL AP + P DP +     ++ PP    G    + LG+D
Sbjct: 26  AFSRNKGAVAGLLFMILIVFCALFAPWVAPHDPSEQYRDFLLTPPAWLEGGQIQFLLGTD 85

Query: 111 SLGRDVIAGIAHGARVSLAVGVVAAVLSLVIGVLVGATAGYFGGRIDDVLVRITELFQTM 170
            LGRD+++ +  G+R+SL +G+ + V+SL+ G+L+G  AG+F   +   ++R+ ++   +
Sbjct: 86  ELGRDLLSRLIQGSRLSLLIGLSSVVMSLIPGILLGLFAGFFPRILGPTIMRLMDIMLAL 145

Query: 171 PSFLFVIVVVAIGQPSVPVIVCAIGLASWPVIARLVRAEFRALRETEFVLAARSQGFSHA 230
           PS L  + +VAI  P +   V AI + S P   RL RA        ++V AAR  G    
Sbjct: 146 PSLLLAVAIVAILGPGLINTVIAIAIVSLPSYVRLTRAAVMGELNRDYVTAARLAGAGLP 205

Query: 231 RIIFQEMLPNALPPVIVTTSVLVASAILIESALSFLGMG-DPNAVSWGSMIGQGRELLRT 289
           R++F  +LPN + P+IV  ++  +SAIL  +AL FLG+G  P    WG+M+   R+ +  
Sbjct: 206 RLMFITVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIER 265

Query: 290 AWYLTALPGAAIVLTVLALNLVGDGLNDAFNPRLR 324
           AW++ +LPG  I+L+VLA+NL+GDGL DA +P+L+
Sbjct: 266 AWWVVSLPGLTILLSVLAINLMGDGLRDALDPKLK 300