Pairwise Alignments

Query, 475 a.a., Type I secretion system, outer membrane component LapE from Variovorax sp. SCN45

Subject, 538 a.a., Type I secretion outer membrane protein, TolC (NCBI) from Rhodospirillum rubrum S1H

 Score = 95.9 bits (237), Expect = 3e-24
 Identities = 106/409 (25%), Positives = 179/409 (43%), Gaps = 25/409 (6%)

Query: 32  KLSRRLAPSALAKELGIQPGLALPEAAETTTPLELTDAVRQAVARHPSISDAIAMLAQQS 91
           KL  +    A+A  L    GL+ P  AET       +A+  A   +P++    A+L    
Sbjct: 51  KLMIKPVSIAVASLLVAGLGLSSPVMAET-----FDEALVSAYQANPTLQARRALLRAVD 105

Query: 92  GGVDVARAGYYPLVRVGMGAGVNGGASATQGGGKRGV----ATASV--SQMLYDFGKVSG 145
             V  A + + P V V    G           G++ +    AT  V   Q ++   +   
Sbjct: 106 EQVPQALSDWRPQVSV---QGSTFYQQMDYEPGRKNLDNRPATLGVVLQQNIFRGLRTVA 162

Query: 146 AVGQSEAQVQRQQATVLKQIDAIAQQAAEAVVMTHRYQSLVAIAQEQVQAVEKVLETARL 205
              Q++AQVQ ++A +      +   AA+A     R Q+++ +     Q + + L+ A  
Sbjct: 163 QTDQAKAQVQSERALLRSVEQTVLLNAAQAYFNVIRDQAVLELNINNEQVLRRQLDAAND 222

Query: 206 RADAGLSTKADPIQAESRVDSARANLLQVKSQLAQWRERLGTLLGR-----SVPPRMAPL 260
           R   G  T+ D  QA+SR+  A A+ +Q +  L   R     ++G        PP  A L
Sbjct: 223 RFRVGEITRTDVAQADSRLAGAIADRIQAEGTLESSRANYTQVVGHPPENIQPPPPYARL 282

Query: 261 PEHLASELRIDLQPDTSLMPEVLAAEAERRAATAQLEVAKAQRYPTISLDASVNRPMGGM 320
           P+ L   L   L    S  P+V+AA    R A A +   + +  PT  L+A V+      
Sbjct: 283 PQTLEDGLNTAL----SANPDVIAALYVWRQAQAAIRDQRGKLLPT--LNAEVSYSFSHN 336

Query: 321 NSGVPERSGGSHSVMLNLSSVLYQGGALEAQVNTAIAAEQAARMRIETARLNAGDQVRNF 380
            S   E    +    LNL+  LYQGGA+ +Q+  A       R++++  R    + + + 
Sbjct: 337 PSATTEYDTKTFQAGLNLTVPLYQGGAVYSQIRDAKHRAGQRRLQVDEQREAVIESLTSA 396

Query: 381 REQVIGAQARLGVLADRRRSIVEARDLYREQYTLGTRSILDLLNAEQEI 429
            E +  A+AR+     +  +   A D  + +  +G+R++LD+L+AEQE+
Sbjct: 397 WETLTSARARVSSYKSQIEAAGIALDGVQREAQVGSRTVLDVLDAEQEL 445