Pairwise Alignments

Query, 705 a.a., Type I secretion system ATPase, LssB family LapB from Variovorax sp. SCN45

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  279 bits (713), Expect = 4e-79
 Identities = 192/698 (27%), Positives = 344/698 (49%), Gaps = 14/698 (2%)

Query: 5   SQYTSW-LDAMLFVARHYGIGASEESVRVSLAWERGAPLDTLLDHMARQLGLTVRLGEFS 63
           S  T+W ++A+++  + +   ++   ++ +L        D  +   A  LGL  ++ + S
Sbjct: 21  SPRTNWGIEAVVYAGQQFHKKSTSSQLKHALGVSYANLTDMEMREAADYLGLKSQITKLS 80

Query: 64  DAMLDPWRLPLVVEFDNGEVGVVRASDGHGQLGVLLGGDHGLETALPLAELRLHAKRVAV 123
               +   LP ++E+  G   +++  D +G        D     +   AE   H K + +
Sbjct: 81  IQAFNTLPLPALIEYQGGWKVMIQTDD-NGWTAYDPATDSLHTLSFTSAESTAHYKVMLI 139

Query: 124 LRPNTAVPDARVDDYIKPYKANWFWAIALRDWRRYGDIVLASMFANVLALASMIFSMQIY 183
              + +V + +       +  +WF    LR   +  D+ L ++   + AL S +    + 
Sbjct: 140 ADESLSVKEVK-------FGLSWFAPSILRQKSQLRDVFLYAIALQIFALVSPMLFENVI 192

Query: 184 DRVVPAQSEPTLWVLFGGVMLAVVFEFMLRVSRTHISDVIGKRADLKVSDVVFGHALRLR 243
           D+V+  +S  +L VL   ++   + E      R  +   +  + + ++S  ++ H + L 
Sbjct: 193 DKVLVGRSLSSLHVLALAMLALAIAEPAYSYLRNTVFGHLASQVNAELSGRLYRHLVGLP 252

Query: 244 -TDARSKSTGSFIAQVREVEQVRELLTSTTISAVADLPFFLLFLVVLWLVAGPLALVALA 302
            T  + + TG  IA+VRE+ Q+R+ LT +T+  + DL F  +FL V++  A  L  + + 
Sbjct: 253 LTYFKQRQTGQIIARVREMAQIRQFLTGSTLMLLLDLIFVTVFLAVMFHYASTLTWLVIG 312

Query: 303 AVPLLVIPGLLIQKPLARLASEGMRES-ALRNALLVEAVEGIEDIKLMRAEPRFQNQWNH 361
           ++ +  +  L I  PL R   E   ES A     L EAV GIE IK    E RF  QW  
Sbjct: 313 SLVIYFVLWL-IAGPLIRKKVESEYESDANATTFLTEAVTGIETIKTTATEHRFLEQWQR 371

Query: 362 VNDVSAGVSMRQRFLTSLLMTWTQEVQTIVYAVVLLAGCFLVMRGDMTTGALVGSSILAS 421
           +       S   +    +       VQ +  A++L  G   V++G++T G LV  ++LA 
Sbjct: 372 ILSQQLNRSFDAQKSGLIAGQAIALVQKLTAALLLWWGVSAVLKGEITPGQLVAFNMLAG 431

Query: 422 RMISPLAQLSGVFARWQQAKVARAGLDQLMQRPVDQADGARLVHAPALHGNYALAGVEFR 481
            +  P+ +L+ ++  +Q   +A   +  ++  P + +    L   P L G    + + FR
Sbjct: 432 HVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPRENSKQG-LASVPELDGGIEFSNIRFR 490

Query: 482 YGKEDKSPALTIAQLQIQAGDKVALLGRMGSGKSTLLQLLAGLQSPQQGHVALDALDLSL 541
           Y  +D    L    L+I+ G  + + G  GSGKSTL +LL  L  PQ G V +D +DL++
Sbjct: 491 Y-HQDAPEVLANLSLKIKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQVLVDGMDLAI 549

Query: 542 IDPADLRRDMGLLTQNARLFHGSIRENVTMGMPLATDDQVFEAVAMAGALSFLQSRAEGL 601
            DP  LRR+M ++ Q + LF GS+ +N+ +  P A+D+++  A  +AGAL+F++    G 
Sbjct: 550 ADPVSLRRNMSVVLQESILFSGSVADNIRLCKPQASDEEIRHAAQLAGALAFIEGLPHGF 609

Query: 602 DELIHEGGLGLSGGQRQALLLARTLIRQPSIVLLDEPTAHFDEVTERHVIDSMGAWLGPR 661
           ++ + E G  LSGGQRQ + LAR L+  P I+LLDE T+  D  +E  ++ +M      R
Sbjct: 610 NQPVGEKGAALSGGQRQRIALARALLVNPRILLLDEATSALDYNSEASIMSNMDEICRGR 669

Query: 662 TLVVATHRMPVLQWVDRIVVIDGGRIVMDGSKDQVLGR 699
           T++   HR+  ++  D I V+D G++   G+ +++L +
Sbjct: 670 TVISIAHRLNTIRHADNIFVLDKGQVAESGTHEELLAQ 707