Pairwise Alignments

Query, 432 a.a., Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC from Variovorax sp. SCN45

Subject, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  149 bits (377), Expect = 1e-40
 Identities = 132/451 (29%), Positives = 204/451 (45%), Gaps = 60/451 (13%)

Query: 33  KSPVQKTGRS-KTAPAAYYSPPEPPLPRASLLVWIIAGLLLALLAWAWSFKLDEVSTGSG 91
           KSP Q T    +  PA       PP P A +    ++  +LA L WA+  KLD  +T +G
Sbjct: 26  KSPHQPTEHHYEFLPAHLALAQRPPSPFARVTALTLSLGVLAALLWAYWGKLDVQATATG 85

Query: 92  KVVPSSREQMIQSLEGGILVDLKVREGDIVDEGEVLAQLDRTKTESTVQESASRVRAALA 151
           ++V S R Q+IQS E   L+ + VR+G  V++G  L  LD       +    S+      
Sbjct: 86  RLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTN 145

Query: 152 MSARLTAEVGGTPLAFPPEVSSDADLVRTETAL----YQSRREQLASSLSGVTQALSLMR 207
              R    +    L   P  ++   L   + AL    Y S + +  S+L+ +T  + + R
Sbjct: 146 ELIRYRTLLNDQLLTHDPMFTA---LPAEQQALIHENYLSEKNEFDSTLASITAEMKVNR 202

Query: 208 RE-----------LALTEPLVARGAA-----------------SDVEVLRLKRQINEAET 239
                        L LTE +  R AA                  + E+L  +RQ+ +   
Sbjct: 203 TSQAARQSDIHALLQLTENISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRA 262

Query: 240 KAADLKSQYYV-----------KAREDLAKAN------AEIEAQRSVTRGRSDSLTRLTF 282
           +   LKSQY             K RE L K        A +  + S  R R         
Sbjct: 263 ELEVLKSQYESLEERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEI---I 319

Query: 283 ASPVRGIVKDIAVTTVGGVLPPGGKLMVIVPLDEKLLVEARISPRDVAFIHPGQEAAVKV 342
            SPV G V+ ++V T+G VL P   LM+IVP +     E +I  +DV F++PGQ   VKV
Sbjct: 320 RSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKV 379

Query: 343 TAYDYAIFGDLPGKVTTISPDTIQDDVKRDVYYYRVYIRTDVDHLKNKNGQSFPIVPGMI 402
            A+ Y  +G +  ++ +IS D+  D+    V+  ++ ++T  +H+   +GQ+  + PGM 
Sbjct: 380 DAFPYTRYGTIDAELLSISRDSTTDEQLGLVFPAQIQLKT--NHIM-IDGQTVELTPGMS 436

Query: 403 ATVDIRTGSKSVLDYLLKPLNK-AGEALRER 432
              +I+T  + V+DYLL P+ +   EALRER
Sbjct: 437 VVAEIKTDKRRVIDYLLSPIQEYQAEALRER 467