Pairwise Alignments

Query, 522 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  196 bits (498), Expect = 2e-54
 Identities = 161/554 (29%), Positives = 256/554 (46%), Gaps = 61/554 (11%)

Query: 5   TISEFLKTHALRRPNHPAYIYSSGAV--TWKELDRRVDALVAAFKKKGLAKGDVVAVCVA 62
           TI EF +  A + P+    +Y    +  T+KE D R D L     + G+ KGD + +   
Sbjct: 7   TIGEFFEKQAQKDPDREFLVYPDRNLRFTYKEFDERTDLLAKGLLEIGIKKGDHIGIWAR 66

Query: 63  DGPVQIEVIYAAARLGAIRVGLNYRFAATDIQKLVAHSGARF-----AIAETGCRNLLDG 117
           + P  +  ++A A++G + V +N  + + ++  ++  S  +      +  +     +L  
Sbjct: 67  NVPDWLTFMFATAKIGVVLVTVNTAYKSHELAYVMKQSDMKALAIIDSFRDVNYLEILYE 126

Query: 118 CSIELGIVDAGDGQGE---------------------------LGEYESMLDFEAPAHSG 150
              EL     G    E                           LG Y S  D +      
Sbjct: 127 LVPELKTSQRGKLNSEEFPYLKNVIYVGQEKHRGMYNTTELMLLGNYVS--DEKLIEAKK 184

Query: 151 PVAGSDVAQICYTTGSTGNPKGAVWLHRSVVHAMGFTLLDIGLSEEDVYLHCLPA----- 205
            +   DV  + YT+G+TG PKG +  H+++++  G+ + +     E+  L CLP      
Sbjct: 185 GLDSDDVINMQYTSGTTGFPKGVMLTHKNILNN-GYYIGEKQKFTEEERL-CLPVPLFHC 242

Query: 206 -AGVPSVLATWNVMLGFTTVVMPRFQADLALDLMERHRCTSTLLIPTMLTAVCEEAERKP 264
              V  VLA   +  G T V++  F   L L  +++ +CT+   +PTM  A       + 
Sbjct: 243 FGIVLGVLAL--LTHGGTLVMLEIFDPLLVLAAIQKEKCTAVYGVPTMFIAEFSHPMFEM 300

Query: 265 RDVSSMRKILYGSASTPPALIRRGGKVFEGIEFEQI---YGSTEGAGGWFTKLSATDHRR 321
            D+SS+R  +   ++ P   ++   KV   +   +I   YG TE A   FT  S  D   
Sbjct: 301 FDLSSLRTGIMAGSTCPIEAMK---KVMSDMYMREITISYGLTE-ASPVFTMTSVDD--- 353

Query: 322 ALESNDDLLSSCGKPTIHARVQIRDDD-GHPCETGQVGEICVAGDFVMEGYYKEEELTRK 380
                +  + S GK   H  V+I D + G     G VGEIC  G  VM+GYYK  E T +
Sbjct: 354 ---PFEKRVESVGKAMPHCEVKIIDPETGETLAPGNVGEICCRGYNVMKGYYKMPEKTAE 410

Query: 381 TL-KDGWLHTGDMGRLDENGYLYLVDRKQFMIITGGYNVYPIEVENVIAAHPDVLETCVF 439
            + KDGWLH+GD+   DE+GY  +V R + MII GG N+YP E+E  +   P + +  V 
Sbjct: 411 VIEKDGWLHSGDLAVEDEDGYYKIVGRIKDMIIRGGENIYPREIEEFLYTMPGINDAQVV 470

Query: 440 GVPDEKWGEAVHAVIVVRPGTTLHAEDVKDWCKTRLAQFKRPKSIEFREALMRGATGKIQ 499
           G+PDEK+GE V A ++ + G  +  EDV+D+   ++A++K PK +   E     A+GKIQ
Sbjct: 471 GIPDEKYGEIVGAFVIPKEGYEIKEEDVRDFALEKIARYKVPKHVFVVEEFPMTASGKIQ 530

Query: 500 KRAEQSRATQALSR 513
           K      A + L +
Sbjct: 531 KFKLTELAVELLKK 544