Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 307 a.a., ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  171 bits (434), Expect = 1e-47
 Identities = 107/301 (35%), Positives = 173/301 (57%), Gaps = 16/301 (5%)

Query: 4   FLQFALAGISVGVIYGAIAVGFNIIYNSSHVVNFAQGEFVMLGAMTCVLLLGAGLPY--- 60
           F Q  + G++VG  Y  IA+G+ ++Y    ++NFA GE  M+G+    + + AGL     
Sbjct: 7   FFQQLVNGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIAI-AGLAMMGL 65

Query: 61  ---PL---AAFLA-VAATAVVGLLLYDVAIRPAKNAPVIMLIIITIGASILIRGLARPIF 113
              PL   AAF+A +  T+  G  +  +A RP + +  ++ +I  IG SI ++       
Sbjct: 66  DSVPLLMTAAFIASIVVTSSYGYSIERIAYRPLRGSNRLIPLISAIGMSIFLQNTVLLSQ 125

Query: 114 GTGVASLPAVVPGA-SISIGGA---VVQPQSLIVVAGTLGAVLLLWLFMRKTLLGKGLIA 169
            +   S+P ++PG  +I  GGA   ++    ++V   TL A+L L LF+ ++ LG+   A
Sbjct: 126 DSKDKSIPNLIPGNFAIGPGGAHEVLISYMQIVVFVVTLVAMLGLTLFISRSRLGRACRA 185

Query: 170 ASSDPMAATLMGIRVSNIVRLSFLISASLGAVSGILIA-PIALANYEMGTLLALKGFAAA 228
            + D   A L+GI  +NI+ L+F+I A+L A++ +L++    + N   G L+ LK F AA
Sbjct: 186 CAEDIKMANLLGINTNNIIALTFVIGAALAAIAAVLLSMQYGVINPNAGFLVGLKAFTAA 245

Query: 229 ILGGMGSIPGAVLGGLLVGLSEAMSAGYISSDYKDATAFVVIMLALFFFPNGLVGSGEVT 288
           +LGG+GSIPGA+LGGL++G++EA  A      YKD  AF +++L L F P G++G  EV 
Sbjct: 246 VLGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFGLLVLVLLFRPTGILGRPEVE 305

Query: 289 R 289
           +
Sbjct: 306 K 306