Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 306 a.a., high-affinity branched-chain amino acid ABC ransporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  128 bits (322), Expect = 1e-34
 Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 1   MTEFLQFALAGISVGVIYGAIAVGFNIIYNSSHVVNFAQGEFVMLGA----MTCVLLLGA 56
           M  F+Q     +  G  Y  IA+G+ ++Y    ++NFA G+  M+GA        +LLG 
Sbjct: 1   METFIQNIFNALQWGSFYALIALGYTLVYGVLLLINFAHGDIFMVGAYISFFVASILLGQ 60

Query: 57  -----GLPYPLAAFLAVAATAV----VGLLLYDVAIRPA--KNAPVIMLIIITIGASILI 105
                 L  P+A  L V  T V    VG+ L  VA RP   K A  + ++I  +   I++
Sbjct: 61  IGGFFELSGPMALALTVPLTMVLTAGVGVTLERVAYRPLRRKGAHRLYVVITALMCGIML 120

Query: 106 RGLARPIFGTGVASLPAVVPGASISIGGAVVQPQSLIVVAGTLGAVLLLWLFMRKTLLGK 165
                 + G    +LP ++     +IG   V    L+V+        LL   + +T +G 
Sbjct: 121 ENGNLALLGASRKALPEMIDKVVYTIGTVSVTNLKLMVIVTAFLVFALLQFIVTRTRIGM 180

Query: 166 GLIAASSDPMAATLMGIRVSNIVRLSFLISASLGAVSGILIA-PIALANYEMGTLLALKG 224
            + A + D  A  LMGI + +I+  +F++ +    ++G+L A    + +  MG ++  K 
Sbjct: 181 AMRAVAWDKFALPLMGIPLDSIIVFTFVLGSGFAGLAGLLFAMSYPILDPYMGAMVGWKA 240

Query: 225 FAAAILGGMGSIPGAVLGGLLVGLSEAMSAGYISSDYKDATAFVVIMLALFFFPNGLVGS 284
           F AA++GG+G I GA +GG L+   E M A    S ++D  AF +++  ++  P GL G 
Sbjct: 241 FIAAVVGGIGDIRGAFIGGFLLAFIEIMVAAVFPSTFRDLFAFSILLFIMWQRPTGLFGV 300

Query: 285 GEVTR 289
            + T+
Sbjct: 301 AKTTK 305