Pairwise Alignments

Query, 418 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 394 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  167 bits (422), Expect = 7e-46
 Identities = 118/375 (31%), Positives = 181/375 (48%), Gaps = 17/375 (4%)

Query: 30  AAKTAKAPGAGGGAPGASGAPALVTLATAQKQDVPVTVQVNGSVVSLNSVDLRPQVTNTV 89
           AA T     A  GAP A     LV + T    DVPVT +          V++R +VT  +
Sbjct: 22  AALTGCKEEAQKGAPPAP----LVEVKTITAGDVPVTSEYVAQTAGSREVEVRARVTGIL 77

Query: 90  SAVHVKEGQFVKAGQLLFTLDDRNDQANLARAKAQQQKDEATLADLERQYKRSQDLVAQN 149
                 EG+ +K G L+F +D    +A L +A+ Q  +++A L+    +  R   L A N
Sbjct: 78  LKRTYTEGRPIKKGALMFEIDPDTYKAALDQAEGQLAQEQARLSRARLERDRVLALYADN 137

Query: 150 FIAKSAADATLSQLEAQRAAVAADRAAVQSAQVALGYATLRAPIAGRIGAVNIYPGTLVQ 209
            +++   D  +++ ++  AAV   +A V+ A++ LGY  + APIAG         G+LV 
Sbjct: 138 AVSQKDRDDAVTEFDSASAAVKVAQARVKEARINLGYTRVDAPIAGVTSKEVRSEGSLVS 197

Query: 210 PTLS---LVTVTQLDPIAVSFPVP---EGNLQDLLEASRSRSKVEAVVT------GRKEP 257
           P+     L T+T+LDP+ V+F VP     +L+ L+E+ ++    + +        G    
Sbjct: 198 PSADGSLLTTITRLDPLYVNFGVPGTEMSSLRRLIESGKAEMPADGLAVQLTLPDGTVYA 257

Query: 258 LAGTLDFVDNTVDPQIGTVRAKAVFANADQGLWPGQFVGTRITVRTLEGATVVPAAALMM 317
             G + F D  VD   GTVR++A F N +  + PGQFV  ++    L+ A +VP  A++ 
Sbjct: 258 RTGKITFTDKQVDQTTGTVRSRAEFPNPEAEVMPGQFVRAKVLGLVLKNAIIVPQRAVLE 317

Query: 318 LSDGPSLYVVDEGKTATRRKVKALHTFGTKVAV-SGVEPGEQVVIEGSQNVRPGGKVRVD 376
              GP +YVV     A  R V      G    +  G+  GE +++EG    RPG  VRV 
Sbjct: 318 TQKGPMVYVVGSDMVANLRPVVVAEALGGDYLIEKGLSGGETIIVEGIIKARPGQPVRVA 377

Query: 377 AKAPAAAPGAPESPA 391
             A  AAP A +  A
Sbjct: 378 QPANGAAPAAAQPGA 392