Pairwise Alignments

Query, 188 a.a., Outer membrane beta-barrel assembly protein BamE from Variovorax sp. SCN45

Subject, 163 a.a., small protein A (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.0 bits (149), Expect = 5e-15
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 17/158 (10%)

Query: 4   ILQRRPWLLVAAIAATLGLGACSGFSERTRVALTAVTPYKVEVVQGNFVSKEQVAALKPG 63
           I +++   L++AIA ++ L ACS F             YK ++ QGN++  +QV  L+  
Sbjct: 2   INKKQSLTLLSAIALSVSLSACSVFDWLI---------YKPDIPQGNYMEPQQVEKLRID 52

Query: 64  MSRQQVREILGTSLLSDVFHNNRWDYVFTIRR-QGVEPQERHLTVFFNGELMDRFEGD-- 120
           M+++Q   ILG  +L D F ++ W YV+  +  +      + L + F G  +   +GD  
Sbjct: 53  MTKEQAEYILGRPVLRDSFADDTWYYVYHYKSGRDASITHKELILHFTGNKLSLVKGDYE 112

Query: 121 -----EMPSEQDFVATLDTRKKSSKVPTLEASEDDLKK 153
                  P EQ  +  ++T + + +VP     E  L K
Sbjct: 113 LSPEFNTPLEQSKLPMVNTTESAPQVPAQRPDEKPLVK 150