Pairwise Alignments

Query, 709 a.a., ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog from Variovorax sp. SCN45

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas fluorescens FW300-N2E2

 Score =  179 bits (455), Expect = 3e-49
 Identities = 183/656 (27%), Positives = 287/656 (43%), Gaps = 88/656 (13%)

Query: 24  LASLNEAQRAAVEHGVGAAVGAGAQADQRPLLVIAGAGSGKTSTLAHRVAHLIAG-GVDP 82
           ++ LN  Q+ AV +  G            PLLV+AGAGSGKTS +  ++AHLI   G+  
Sbjct: 1   MSRLNPRQQEAVNYVGG------------PLLVLAGAGSGKTSVITRKIAHLIQNCGIRA 48

Query: 83  QRLLLLTFSRRAAQEMGRRAGQVLTKVLGLKSEAPPSLPWAGTFHGIGARLLREYAAQIG 142
           Q ++ +TF+ +AA+EM  R G +L    G             TFH +G  ++R+  A++G
Sbjct: 49  QYIVAMTFTNKAAREMKERVGGLLRAGEGRGLTVC-------TFHNLGLNIIRKEHARLG 101

Query: 143 LDENFTIHDRGDAEDLM-GLARHELGLSSTVNRFPR-----KGTCLSIYSRCVNTRAPLA 196
               F+I D  D + LM  + + E      V+         K   +       N R P  
Sbjct: 102 YKPGFSIFDETDVKALMTDIMQKEYSGDDGVDEIKNMIGSWKNDLILPPQALENARNPK- 160

Query: 197 EVLRESFPWCGEWEAELKTLFGAYVEAKHRQNVLDYDDLLLYWAGMVAE-PELAAHVGAR 255
                        E     ++  Y       N +D+DDL+L    +  +  ++      +
Sbjct: 161 -------------EQTAAIVYTHYQRTLKAFNAVDFDDLILLPVKLFQDHADILEKWQNK 207

Query: 256 FDHVLVDEYQDTNLLQASILLALKPDGRGVTVVGDDAQSIYSFRGATVRNIL----DFPS 311
             ++LVDEYQDTN  Q  ++  L       TVVGDD QSIY++RGA   N++    D+PS
Sbjct: 208 VRYLLVDEYQDTNASQYLLVKLLIGTRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYPS 267

Query: 312 QFTQDARVVTLERNYRSTQPILDVSNRVIAQAAERHAKTLWTDKPSAGKPLLVLVPDEAG 371
                 +VV LE+NYRST  IL  +N +I+       K LW++     +  ++   +E  
Sbjct: 268 -----LKVVMLEQNYRSTSRILRCANVLISNNPHEFEKQLWSEMGHGDEIRVIRCRNEDA 322

Query: 372 QARWVADKVLA-HREGGLALKSQAVLFRTSTHSAALELELARRNIPFVKFGGLKFLEASH 430
           +A  VA ++L+ H          A+L+R +  +  +EL+L    IP+   GG  F     
Sbjct: 323 EAERVAMEILSLHLRTDRPYSDFAILYRGNYQAKLIELKLQHHQIPYRLSGGNSFFGRQE 382

Query: 431 VKDLLAVLRFAQNPRGRMAGFRVTQLIP--GIGPVTGTRLLD-AMDQAADPVAAVRDFVP 487
           VKDL+A  R   NP    A  RV   +P   IG  T  +L + A ++     AA  +   
Sbjct: 383 VKDLMAYFRLIVNPDDDNAFLRVIN-VPRREIGSTTLEKLGNYATERKISMYAATDEIGL 441

Query: 488 PSAARAQWADFATAYEALRSPALEWPADVEVAMAWYQPHLERLYE-----DTSGVRRADV 542
                +++ D    ++       E  A  +   A     ++  YE     ++S  + AD 
Sbjct: 442 GEHLDSRFTDRLARFKRFMDKVREQCAGEDPISALRSMVMDIDYENWLRTNSSSDKAADY 501

Query: 543 EQLARLAAGYGSRERFLTEL---TLDPPE----ATSDRPGPPLLDE------------DY 583
                      S   FL E    TL+  E       D  G  +L +            + 
Sbjct: 502 RM---------SNVWFLIEALKNTLEKDEDGDMTVEDAIGKLVLRDMLERQQEEEDGAEG 552

Query: 584 LILSTIHSAKGQEWNSVHVLNVVDGCLPADVAQSAHELEEERRLLYVAMTRARDHL 639
           + + T+H++KG E+  V ++ + +  LP   +  A  +EEERRL YV +TRAR  L
Sbjct: 553 VQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIEADTIEEERRLAYVGITRARQTL 608